Motif HL_01181.2 Version HL_01181.2 of this group appears in releases 3.18 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_220 | 4V88 | 0.9470 | 2 | A6 | SSU rRNA | G | 1594 | U | 1595 | A | 1597 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | ntWW |
| 2 | HL_1L2X_001 | 1L2X | 0.0000 | 1 | A | RNA pseudoknot | G | 7 | C | 8 | A | 9 | C | 10 | C | 11 | G | 12 | C | 14 | ||
| 3 | HL_2A43_001 | 2A43 | 0.1275 | 1 | A | Putative RNA-dependent RNA polymerase ribosomal frameshift site | G | 6 | C | 7 | A | 8 | C | 9 | C | 10 | G | 11 | C | 13 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACCGUC | 2 |
| GUCAUCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CACCGU | 2 |
| UCAUCAG | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 |
|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tWH-R-R-R
- Heat map statistics
- Min 0.13 | Avg 0.46 | Max 1.00
Coloring options: