Motif HL_03345.1 Version HL_03345.1 of this group appears in releases 3.80 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_6MJ0_006 | 6MJ0 | 0.5013 | 2 | B | tRNA-like 3' UTR element | U | 12 | C | 13 | U | 14 | U | 15 | A | 18 | A | 19 | A | 20 | cWW | cSW | ncSH | |
2 | HL_5TBW_015 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | G | 686 | U | 687 | G | 688 | A | 690 | A | 692 | A | 693 | C | 694 | cWW | ntSH | tSH | |
3 | HL_8C3A_015 | 8C3A | 0.0673 | 2 | 1 | LSU rRNA | G | 684 | U | 685 | G | 686 | A | 688 | A | 690 | A | 691 | C | 692 | cWW | ncSW | tSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUGUAAAAC | 2 |
UCUUUAAAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGUAAAA | 2 |
CUUUAAA | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cSW-tSH-F
- Heat map statistics
- Min 0.07 | Avg 0.24 | Max 0.51
Coloring options: