Motif HL_04171.7 Version HL_04171.7 of this group appears in releases 3.94 to 3.98

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)		1		2		3		4		5		6		7		8		9		10	1-10	2-9	4-7	5-7	8-9
1	HL_7KVT_001	7KVT	0.2374	1	B	A	23	U	24	A	25	A	26	U	27	A	28	G	30	G	31	U	32	U	33	cWW	cwW
2	HL_3IVN_001	3IVN	0.1901	1	A	A	21	U	22	G	23	A	24	U	25	A	26	G	28	G	29	U	30	U	31	cWW	cwW		ncSs
3	HL_8KEB_001	8KEB	0.0815	1	A	A	18	U	19	G	20	A	21	U	22	A	23	G	25	G	26	U	27	U	28	cWW	cwW	ncsS
4	HL_1Y26_001	1Y26	0.0601	1	X	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW	ncsS	ncSs
5	HL_4XNR_001	4XNR	0.0596	1	X	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW		ncSs
6	HL_4LX6_001	4LX6	0.0000	1	A	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW		ncSs
7	HL_3LA5_001	3LA5	0.0835	1	A	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW		ncSs
8	HL_5SWD_004	5SWD	0.1243	1	B	A	30	U	31	G	32	A	33	U	34	A	35	G	37	G	38	U	39	U	40	cWW	cwW		ncSs
9	HL_4ATO_001	4ATO	0.6132	1	G	U	15	U	16	A	17	C	18	C	19	G	20	A	22	G	23	U	24	A	25	cWW	cwW			cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
AUGAUAUGGUU	7
AUAAUAUGGUU	1
UUACCGUAGUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAUAUGGU	7
UAAUAUGGU	1
UACCGUAGU	1

Release history

Release	3.94	3.95	3.96	3.97	3.98
Date	2025-02-26	2025-03-26	2025-04-23	2025-05-21	2025-06-18
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (9)
Basepair signature: cWW-cWW-F-F-F-F-F-F
Heat map statistics: Min 0.06 | Avg 0.22 | Max 0.63

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Coloring options: Nucleotide numbers

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