Motif HL_05018.4 Version HL_05018.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_070 | 5TBW | 0.5248 | 1 | 1 | LSU rRNA | G | 3303 | A | 3305 | U | 3306 | A | 3307 | C | 3308 | G | 3309 | A | 3310 | C | 3311 | cWW | cSW | |
| 2 | HL_4V9F_069 | 4V9F | 0.4750 | 1 | 0 | LSU rRNA | G | 2836 | A | 2838 | C | 2839 | A | 2840 | A | 2841 | G | 2842 | A | 2843 | C | 2844 | cWW | cSW | |
| 3 | HL_5J7L_201 | 5J7L | 0.3939 | 1 | DA | LSU rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | G | 2825 | A | 2826 | C | 2827 | cWW | cSW | |
| 4 | HL_7A0S_067 | 7A0S | 0.0000 | 1 | X | LSU rRNA | G | 2794 | A | 2796 | G | 2797 | A | 2798 | C | 2799 | C | 2800 | A | 2801 | C | 2802 | cWW | cSW | |
| 5 | HL_4WF9_064 | 4WF9 | 0.1087 | 1 | X | LSU rRNA | A | 2839 | A | 2841 | G | 2842 | A | 2843 | U | 2844 | G | 2845 | A | 2846 | U | 2847 | cWW | cSW | |
| 6 | HL_4Y4O_171 | 4Y4O | 0.1594 | 1 | 2A | LSU rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | C | 2825 | A | 2826 | C | 2827 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGACCAC | 2 |
| GUAUACGAC | 1 |
| GUACAAGAC | 1 |
| GAAGACGAC | 1 |
| AAAGAUGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGACCA | 2 |
| UAUACGA | 1 |
| UACAAGA | 1 |
| AAGACGA | 1 |
| AAGAUGA | 1 |
- Annotations
- Basepair signature
- cWW-cSW-R-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.33 | Max 0.56
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