#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8 91-92-83-6
1 HL_5E81_2205E810.55830tRNA anticodon loop3L tRNAA31C32U33U34U35U36A37A38U39cWW
2 HL_1N78_0021N780.38190tRNA anticodon loopCtRNA(Glu)C531C532U533C534U535C536A537A538G539cWWncWW
3 HL_3W3S_0023W3S0.41300tRNA anticodon loopBSelenocysteine transfer RNAA31C32U33U34C35A36A37A38U39cWWncWW
4 HL_4MGN_0034MGN0.33880tRNA anticodon loopBtRNA-glycineC30U31U32G33C34C35A36A37G38cWW
5 HL_1XNQ_0341XNQ0.36690tRNA anticodon loopXAnticodon tRNAG31C32U33I34C35G36A37A38C39cWW
6 HL_1N32_0331N320.34180tRNA anticodon loopYANTICODON STEM-LOOP OF LEU-2 TRANSFER RNAC31U32U33G34A35G36G37PSU38G39cWW
7 HL_4WSM_2094WSM0.32200tRNA anticodon loop1K tRNAC32U33U34G35A36G371MG38PSU39G40cWW
8 HL_4V9K_0344V9K0.28520tRNA anticodon loopAW tRNAA31C32U33C34A35U36A37A38U39cWWncWW
9 HL_3WFS_0023WFS0.27650tRNA anticodon loopA tRNAA31C32U33G34A35A36A37A38U39ncWWncWW
10 HL_1U0B_0021U0B0.21840tRNA anticodon loopA tRNAA31U32U33G34C35A36A37A38U39cWW
11 HL_5T83_0025T830.24160Anticodon loop relatedAGuanidine-I riboswitchU56U57U58C59A60C61A62A63A64cWWntSHa
12 HL_4R4V_0014R4V0.21010Anticodon loop relatedAVS ribozyme RNAC626G627U628C629G630U631C632G633G634cWWtSH
13 HL_3TUP_0023TUP0.21560tRNA anticodon loopT tRNAA31C32U33G34A35A36A37A38U39cWW
14 HL_7K98_0027K980.25440tRNA anticodon loopC tRNAC32C33U34G35A36A37A38A39G40cWWntSH
15 HL_4YCO_0024YCO0.16580tRNA anticodon loopD tRNAA31U32U33G34A35A36A37A38U39cWW
16 HL_6GSK_2036GSK0.17870tRNA anticodon loop1K tRNAC31U32U33G34G35U36AET37A38G39cWW
17 HL_4V87_1074V870.16660tRNA anticodon loopBBTRNA-LEUC32U33U34G35A36G37G38U39G40cWW
18 HL_4V9I_0394V9I0.16910tRNA anticodon loopAY tRNAU31C32U33C34G35A36A37A38A39cWW
19 HL_7U2I_1047U2I0.00000tRNA anticodon loop1w tRNAC31U32U33C34C35C36A37A38G39cWW
20 HL_4B3R_0344B3R0.12150tRNA anticodon loopZRNA (15-mer)A31U32U33G34A35A36A37A38U39cWW
21 HL_5IBB_2105IBB0.14370tRNA anticodon loop1L tRNAC31C32U33U34A35C36A37A38G39cWWncWW
22 HL_6GSL_2096GSL0.15530tRNA anticodon loop1L tRNAG32RSP33U34I35C36G372MA38A39C40cWW
23 HL_7VNV_0027VNV0.14440tRNA anticodon loopA tRNAC31OMC32U33OMU34A35C36A37A38G39cWWntSHa
24 HL_4V90_0334V900.34520tRNA anticodon loopAV tRNAA31U32U33G34A35A36A37A38U39cWW
25 HL_4WZD_2384WZD0.15060tRNA anticodon loop2K tRNAA32||||P_1C33||||P_1U34||||P_1QUO35||||P_1U36||||P_1A37||||P_1MIA38||||P_1A39||||P_1PSU40||||P_1cWW
26 HL_4TUE_0344TUE0.15720tRNA anticodon loopQV tRNAG31C32U33C34A35U36A37A38C39cWW
27 HL_6CFJ_1076CFJ0.13960tRNA anticodon loop1x tRNAG315MC32U33C34A35U36A37A38C39cWW
28 HL_9DFC_1049DFC0.149101x tRNAG315MC32U33C34A35U36A37A38C39cWW
29 HL_5E81_2125E810.16540tRNA anticodon loop2K tRNAG32OMC33U34C35A36U37A38A39C40cWW
30 HL_4V9Q_2144V9Q0.18420tRNA anticodon loopDV tRNAG31C32U33C34A35U36A37A38C39cWW
31 HL_4WT8_2164WT80.18920tRNA anticodon loopD4 tRNAG32C33U34C35A36U37A38A39C40cWW
32 HL_4V50_1374V500.18470tRNA anticodon loopCWPHE TRNA (UNMODIFIED BASES)G31C32U33C34A35U36A37A38C39cWWncWW
33 HL_6NTA_1386NTA0.19390tRNA anticodon loopXVP-site ASLProG31U32U33C34G35G361MG37A38C39cWW
34 HL_2AZX_0052AZX0.17430tRNA anticodon loopD72-MERA531C532U533C534C535A536G537A538U539cWW
35 HL_6UFM_0026UFM0.16340tRNA anticodon loopA tRNAG32C33U34G35A36U37A38A39C40cWW
36 HL_7QR3_0017QR30.19570Anticodon loop relatedCchimpanzee CPEB3 ribozymeG19U20U21C22A23C24G25U26C27cWWntSHa
37 HL_7QR4_0017QR40.21080Anticodon loop relatedBRNA CPEB3 ribozymeG19U20U21C22A23C24G25U26C27cWW
38 HL_7OSM_1167OSM0.22060tRNA anticodon loopASIT tRNAA31U32U33G34A35A36YG37A38U39ncWW
39 HL_6NWY_0346NWY0.25710tRNA anticodon loopQV tRNAG31U32U33C34G35G361MG37A38C39cWW
40 HL_1FIR_0051FIR0.29130tRNA anticodon loopA tRNAA31C32U3370U34U35U3612A37A38PSU39cWWncWB
41 HL_5E81_2355E810.26010tRNA anticodon loop1K tRNAA31C32U33U8U34U35U36T6A37A38PSU39cWWncWW
42 HL_5J8B_1185J8B0.29360tRNA anticodon loopw tRNAA31PSU32U33G34A35A36MIA37A38PSU39cWW
43 HL_5EL4_2495EL40.37850tRNA anticodon loop3L tRNAA31C32U33U34U35U36A37A38PSU39cWWtSH
44 HL_1VTQ_0021VTQ0.37440tRNA anticodon loopAT-RNA-ASPC31PSU32U33G34U35C361MG37C38G39cWWntSHa
45 HL_1B23_0041B230.51990tRNA anticodon loopR tRNAA31PSU32U33G34C35A36MIA37A38PSU39ncWW
46 HL_4P5J_0024P5J0.54960Anticodon loop relatedAtRNA-like 3' UTR elementC25U26C27G28A29C30A31C32G33cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCUCAUAAC4
AUUGAAAAU3
ACUGAAAAU2
GUCAUAAC2
GUUCGGAC2
GUUCACGUC2
ACUUUUAAU1
CCUCUCAAG1
ACUUCAAAU1
CUUGCCAAG1
GCU(I)CGAAC1
CUUGAGG(PSU)G1
CUUGAGG1
ACUCAUAAU1
AUUGCAAAU1
UUUCACAAA1
CGUCGUCGG1
CCUGAAAAG1
CUUGGUAG1
CUUGAGGUG1
UCUCGAAAA1
CUUCCCAAG1
CCUUACAAG1
G(RSP)U(I)CG(2MA)AC1
CUACAAG1
ACU(QUO)UA(MIA)A(PSU)1
G(5MC)UCAUAAC1
ACUCCAGAU1
GCUGAUAAC1
AUUGAA(YG)AU1
ACU(70U)UU(12A)A(PSU)1
ACU(U8U)UU(T6A)A(PSU)1
A(PSU)UGAA(MIA)A(PSU)1
ACUUUUAA(PSU)1
CUGUCCG1
A(PSU)UGCA(MIA)A(PSU)1
CUCGACACG1
Non-Watson-Crick part of the motif
SequenceCounts
CUCAUAA5
CUGAAAA3
UUGAAAA3
CUUUUAA2
(5MC)UCAUAA2
UUCGG(1MG)A2
UUCACGU2
CUCUCAA1
CUUCAAA1
UUGCCAA1
CU(I)CGAA1
UUGAGG(PSU)1
UUGAG(1MG)(PSU)1
UUGCAAA1
UUCACAA1
GUCGUCG1
UUGGU(AET)A1
UUGAGGU1
CUCGAAA1
UUCCCAA1
CUUACAA1
(RSP)U(I)CG(2MA)A1
(OMC)U(OMU)ACAA1
CU(QUO)UA(MIA)A1
(OMC)UCAUAA1
CUCCAGA1
CUGAUAA1
UUGAA(YG)A1
CU(70U)UU(12A)A1
CU(U8U)UU(T6A)A1
(PSU)UGAA(MIA)A1
(PSU)UGUC(1MG)C1
(PSU)UGCA(MIA)A1
UCGACAC1

Release history

Release3.94
Date2025-02-26
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA anticodon loop (40)
  • Anticodon loop related (5)
  • (1)
  • Basepair signature
    cWW-F-F-F-F-F-F-F
    Heat map statistics
    Min 0.06 | Avg 0.34 | Max 0.81
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