Motif HL_07306.1 Version HL_07306.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_163 | 5J7L | 0.7137 | 5 | DA | LSU rRNA | G | 1171 | C | 1172 | C | 1178 | ncWW | |
| 2 | HL_4WT8_135 | 4WT8 | 0.4229 | 7 | tRNA D-loop | C3 | tRNA | C | 13 | A | 14 | G | 22 | ncWW |
| 3 | HL_4RDX_001 | 4RDX | 0.1300 | 8 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 22 | cWW |
| 4 | HL_7UQ6_001 | 7UQ6 | 0.0000 | 6 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | G | 21 | cWW |
| 5 | HL_7EQJ_004 | 7EQJ | 0.1369 | 7 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | G | 22 | cWW |
| 6 | HL_6UGG_004 | 6UGG | 0.1275 | 8 | B | tRNA | C | 12 | A | 13 | G | 22 | cWW | |
| 7 | HL_4V90_032 | 4V90 | 0.1726 | 7 | tRNA D-loop | AV | tRNA | C | 13 | A | 14 | G | 22 | cWW |
| 8 | HL_6ORD_035 | 6ORD | 0.2771 | 7 | QY | tRNA | C | 13 | A | 14 | G | 22 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCUGGGAG | 2 |
| GCUUAUGC | 1 |
| CAGUCGGUAG | 1 |
| CAGCUGGUUAG | 1 |
| CAGUGGUAG | 1 |
| CAGUCGGUUAG | 1 |
| CAGCCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCUGGGA | 2 |
| CUUAUG | 1 |
| AGUCGGUA | 1 |
| AGCUGGUUA | 1 |
| AGUGGUA | 1 |
| AGUCGGUUA | 1 |
| AGCCGGUA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (5)
- (3)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.10 | Avg 0.34 | Max 0.78
Coloring options: