Motif HL_07480.3 Version HL_07480.3 of this group appears in releases 4.0 to 4.12
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1B23_001 | 1B23 | 0.1937 | 4 | R | tRNA | A | 12 | A | 13 | A | 14 | G | 15 | C | 16 | A | 22 | U | 23 | cWW | ntSH |
| 2 | HL_1U0B_001 | 1U0B | 0.0000 | 4 | A | tRNA | A | 12 | A | 13 | A | 14 | G | 15 | C | 16 | A | 22 | U | 23 | cWW | tSH |
| 3 | HL_9MTS_101 | 9MTS | 0.1175 | 4 | 1x | tRNA | A | 12 | A | 13 | A | 14 | G | 15 | C | 16 | A | 22 | U | 23 | cWW | tSH |
| 4 | HL_6ZDQ_001 | 6ZDQ | 0.7281 | 3 | C | RNA | C | 1272 | C | 1273 | G | 1274 | A | 1275 | A | 1276 | G | 1279 | G | 1281 | cWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAGCGGAU | 1 |
| AAAGCGGUUAU | 1 |
| AAAGCGG(H2U)(H2U)AU | 1 |
| CCGAAUUGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCGG(H2U)(H2U)A | 2 |
| AAGCGGUUA | 1 |
| CGAAUUGU | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.34 | Max 0.73
Coloring options: