Motif HL_07951.1 Version HL_07951.1 of this group appears in releases 3.89 to 3.93
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RDX_001 | 4RDX | 0.5631 | 7 | C | tRNA | C | 13 | A | 14 | G | 15 | G | 22 | cWW | |
| 2 | HL_1GAX_004 | 1GAX | 0.0000 | 5 | tRNA D-loop | D | TRNA(VAL) | C | 913 | A | 914 | G | 915 | G | 921 | cWW |
| 3 | HL_3WQY_001 | 3WQY | 0.2542 | 5 | C | tRNA | C | 1613 | A | 1614 | G | 1615 | G | 1622 | cWW | |
| 4 | HL_6ORD_035 | 6ORD | 0.5686 | 6 | QY | tRNA | C | 13 | A | 14 | G | 15 | G | 22 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCUGGUUAG | 1 |
| CAGCGGAAG | 1 |
| CAGCGGGAG | 1 |
| CAGCUGGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCUGGUUA | 1 |
| AGCGGAA | 1 |
| AGCGGGA | 1 |
| AGCUGGGA | 1 |
- Annotations
-
- (3)
- tRNA D-loop (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.25 | Avg 0.42 | Max 0.87
Coloring options: