Motif HL_08382.2 Version HL_08382.2 of this group appears in releases 0.7 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5F_031 | 3U5F | 0.6925 | 0 | 6 | 18S rRNA | C | 1359 | A | 1360 | U | 1361 | U | 1362 | U | 1363 | G | 1364 | cWW |
| 2 | HL_1JBS_002 | 1JBS | 0.0000 | 0 | D | 29-mer sarcin/ricin domain RNA analog | C | 13 | G | 14 | A | 15 | U | 16 | A | 17 | G | 18 | cWW |
| 3 | HL_2QUW_003 | 2QUW | 0.6945 | 0 | B | Hammerhead ribozyme, cleaved fragment | C | 42 | G | 43 | U | 44 | G | 45 | A | 46 | G | 47 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUUG | 1 |
| CGAUAG | 1 |
| CGUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUU | 1 |
| GAUA | 1 |
| GUGA | 1 |
Release history
| Release | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_08382.2 | Only in the parent motif |
|---|---|---|---|
| HL_08382.1 Compare | HL_3U5F_031, HL_2QUW_003, HL_1JBS_002 | HL_2OEU_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_08382.2 | Only in the child motif |
|---|---|---|---|
| HL_08382.3 Compare | HL_3U5F_031, HL_2QUW_003, HL_1JBS_002 | HL_1VW3_042 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.69 | Avg 0.49 | Max 0.83
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