Motif HL_08748.1 Version HL_08748.1 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_032 | 4V9F | 0.0000 | 0 | GNRA with CC cWW pair | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | U | 1279 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH |
| 2 | HL_4WF9_039 | 4WF9 | 0.9982 | 0 | X | LSU rRNA | A | 1673 | U | 1674 | G | 1675 | A | 1676 | G | 1677 | A | 1678 | A | 1679 | U | 1680 | U | 1681 | cWW | cwW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCAUACU | 1 |
| AUGAGAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAUAC | 1 |
| UGAGAAU | 1 |
- Annotations
-
- GNRA with CC cWW pair (1)
- Basepair signature
- cWW-cWW-tSH-R-R-R
- Heat map statistics
- Min 1.00 | Avg 0.50 | Max 1.00
Coloring options: