Motif HL_10453.3 Version HL_10453.3 of this group appears in releases 3.96 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_014 | 5J7L | 0.6054 | 0 | AA | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | |
| 2 | HL_4LFB_014 | 4LFB | 0.6416 | 0 | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH | |
| 3 | HL_2A43_001 | 2A43 | 0.5691 | 1 | A | RNA Pseudoknot | G | 6 | C | 7 | A | 8 | C | 9 | C | 10 | G | 11 | C | 13 | cWW | tWH | |
| 4 | HL_8H1B_001 | 8H1B | 0.2605 | 2 | tRNA anticodon loop | C | RNA (17-mer) | A | 31 | C | 32 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW | ncWB |
| 5 | HL_8H0S_002 | 8H0S | 0.2205 | 2 | tRNA anticodon loop | Y | RNA (17-mer) | A | 31 | C | 32 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW | ncWB |
| 6 | HL_6MPI_033 | 6MPI | 0.0000 | 2 | tRNA anticodon loop | X | tRNA ASL Escherichia coli Arg1 | G | 31 | RSP | 32 | C | 35 | G | 36 | A | 37 | A | 38 | C | 39 | cWW | |
| 7 | HL_6MKN_034 | 6MKN | 0.1038 | 2 | tRNA anticodon loop | X | tRNA ASL Escherichia coli Arg2 | G | 31 | C | 32 | C | 35 | G | 36 | A | 37 | A | 38 | C | 39 | cWW | |
| 8 | HL_6UFH_001 | 6UFH | 0.4216 | 1 | A | RNA (167-MER) | G | 13 | C | 14 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | ||
| 9 | HL_3OXE_001 | 3OXE | 0.5205 | 1 | A | domain II of glycine riboswitch | G | 17 | U | 19 | U | 20 | A | 21 | A | 22 | U | 23 | C | 24 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUCAAC | 2 |
| ACUUUGACU | 2 |
| GCACCGUC | 1 |
| G(RSP)U(I)CGAAC | 1 |
| GCU(I)CGAAC | 1 |
| GCGAUCAC | 1 |
| GUUUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAA | 2 |
| CUUUGAC | 2 |
| CACCGU | 1 |
| (RSP)U(I)CGAA | 1 |
| CU(I)CGAA | 1 |
| CGAUCA | 1 |
| UUUAAU | 1 |
- Annotations
-
- (5)
- tRNA anticodon loop (4)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.45 | Max 0.83
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