Motif HL_11805.4 Version HL_11805.4 of this group appears in releases 3.87 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 4-9 | 5-10 | 6-9 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_7A0S_054 | 7A0S | 0.5966 | 0 | X | LSU rRNA | G | 2282 | G | 2283 | U | 2284 | U | 2285 | G | 2286 | G | 2287 | A | 2288 | A | 2289 | A | 2290 | U | 2291 | C | 2292 | cWW | ncWS | ncHW | ncSW | ||
2 | HL_5J7L_188 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 2303 | G | 2304 | U | 2305 | C | 2306 | G | 2307 | G | 2308 | A | 2309 | C | 2310 | A | 2311 | U | 2312 | C | 2313 | cWW | ncWS | ncWH | |||
3 | HL_8VTW_054 | 8VTW | 0.1551 | 0 | 1A | LSU rRNA | G | 2303 | G | 2304 | A | 2305 | C | 2306 | G | 2307 | G | 2308 | A | 2309 | A | 2310 | A | 2311 | U | 2312 | C | 2313 | cWW | ncHH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUUGGAAAUC | 1 |
GGUCGGACAUC | 1 |
GGACGGAAAUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUUGGAAAU | 1 |
GUCGGACAU | 1 |
GACGGAAAU | 1 |
Release history
Release | 3.87 |
---|---|
Date | 2024-08-14 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.16 | Avg 0.31 | Max 0.64
Coloring options: