Motif HL_16898.1 Version HL_16898.1 of this group appears in releases 3.25 to 3.32
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6DLR_001 | 6DLR | 0.8318 | 0 | UNCG variation | A | Guanidine-I riboswitch | C | 27 | U | 28 | U | 29 | C | 30 | G | 31 | G | 32 | cWW | tSW |
| 2 | HL_4LGT_001 | 4LGT | 0.5729 | 0 | UNCG | E | stem-loop of 23S rRNA | C | 2594 | G | 2595 | U | 2596 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 3 | HL_3DH3_003 | 3DH3 | 0.0000 | 0 | UNCG | F | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | U | 2596 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 4 | HL_3DH3_001 | 3DH3 | 0.2472 | 0 | UNCG | E | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | U | 2596 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 5 | HL_5J7L_156 | 5J7L | 0.8289 | 1 | DA | LSU rRNA | U | 779 | G | 780 | A | 781 | A | 782 | A | 783 | G | 785 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGAG | 3 |
| CUUCGG | 1 |
| UGAAAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGA | 3 |
| UUCG | 1 |
| GAAAG | 1 |
Release history
| Release | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 |
|---|---|---|---|---|---|---|---|---|
| Date | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UNCG (3)
- (1)
- UNCG variation (1)
- Basepair signature
- cWW-tSW-R-R
- Heat map statistics
- Min 0.25 | Avg 0.58 | Max 0.98
Coloring options: