Motif HL_18218.1 Version HL_18218.1 of this group appears in releases 3.12 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_012 | 5TBW | 0.2949 | 2 | 1 | LSU rRNA | C | 543 | C | 544 | G | 547 | G | 548 | ncWW | |
| 2 | HL_2ZZM_002 | 2ZZM | 0.0000 | 5 | B | tRNA | G | 31 | C | 32 | A | 38 | C | 39 | cWW | ncWW |
| 3 | HL_361D_002 | 361D | 0.3137 | 2 | B | RNA (20-mer) | G | 86 | G | 87 | A | 89|||A | C | 90 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUCGG | 1 |
| GCCUAGGAC | 1 |
| GGCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCG | 1 |
| CCUAGGA | 1 |
| GCGA | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.29 | Avg 0.21 | Max 0.36
Coloring options: