#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 91-92-83-74-6
1 HL_8C3A_0568C3A0.126741 LSU rRNAU2605U2606A2607A2608A2612U2613A2614A2615G2617cWWntSHtHHtWW
2 HL_5TBW_0555TBW0.120341 LSU rRNAU2633U2634A2635A2636A2640U2641A2642A2643G2645cWWntSHtHHtWW
3 HL_4V9F_0564V9F0.119540 LSU rRNAC2298G2299A2300A2301A2305U2306A2307U2308G2310cWWtSHtHHtWW
4 HL_4WF9_0504WF90.00004X LSU rRNAC2291U2292A2293A2294G2298U2299A2300A2301G2303cWWntSHtHHtWW
5 HL_5J7L_1875J7L0.09674DA LSU rRNAC2264U2265A2266A2267G2271U2272A2273A2274G2276cWWntSHtHHtWW
6 HL_8VTW_0538VTW0.084141A LSU rRNAC2264U2265A2266A2267G2271U2272A2273A2274G2276cWWntSHtHHtWW
7 HL_7A0S_0537A0S0.13784X LSU rRNAC2243C2244A2245A2246G2250U2251A2252A2253G2255cWWntSHntHHtWW
8 HL_1B23_0041B230.91950R tRNAA31PSU32U33G34C35A36MIA37A38PSU39ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUAAACGAUAACG2
CUAAAAGGUAACG2
CGAAAAGAUAUCG1
CUAAAGAGUAACG1
CCAAAAUGUAACG1
A(PSU)UGCA(MIA)A(PSU)1
Non-Watson-Crick part of the motif
SequenceCounts
UAAACGAUAAC2
UAAAAGGUAAC2
GAAAAGAUAUC1
UAAAGAGUAAC1
CAAAAUGUAAC1
(PSU)UGCA(MIA)A1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (8)
  • Basepair signature
    cWW-tSH-tHH-tWW-F
    Heat map statistics
    Min 0.08 | Avg 0.29 | Max 0.95
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