Motif HL_19870.8 Version HL_19870.8 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8C3A_056 | 8C3A | 0.1267 | 4 | 1 | LSU rRNA | U | 2605 | U | 2606 | A | 2607 | A | 2608 | A | 2612 | U | 2613 | A | 2614 | A | 2615 | G | 2617 | cWW | ntSH | tHH | tWW |
2 | HL_5TBW_055 | 5TBW | 0.1203 | 4 | 1 | LSU rRNA | U | 2633 | U | 2634 | A | 2635 | A | 2636 | A | 2640 | U | 2641 | A | 2642 | A | 2643 | G | 2645 | cWW | ntSH | tHH | tWW |
3 | HL_4V9F_056 | 4V9F | 0.1195 | 4 | 0 | LSU rRNA | C | 2298 | G | 2299 | A | 2300 | A | 2301 | A | 2305 | U | 2306 | A | 2307 | U | 2308 | G | 2310 | cWW | tSH | tHH | tWW |
4 | HL_4WF9_050 | 4WF9 | 0.0000 | 4 | X | LSU rRNA | C | 2291 | U | 2292 | A | 2293 | A | 2294 | G | 2298 | U | 2299 | A | 2300 | A | 2301 | G | 2303 | cWW | ntSH | tHH | tWW |
5 | HL_5J7L_187 | 5J7L | 0.0967 | 4 | DA | LSU rRNA | C | 2264 | U | 2265 | A | 2266 | A | 2267 | G | 2271 | U | 2272 | A | 2273 | A | 2274 | G | 2276 | cWW | ntSH | tHH | tWW |
6 | HL_8VTW_053 | 8VTW | 0.0841 | 4 | 1A | LSU rRNA | C | 2264 | U | 2265 | A | 2266 | A | 2267 | G | 2271 | U | 2272 | A | 2273 | A | 2274 | G | 2276 | cWW | ntSH | tHH | tWW |
7 | HL_7A0S_053 | 7A0S | 0.1378 | 4 | X | LSU rRNA | C | 2243 | C | 2244 | A | 2245 | A | 2246 | G | 2250 | U | 2251 | A | 2252 | A | 2253 | G | 2255 | cWW | ntSH | ntHH | tWW |
8 | HL_1B23_004 | 1B23 | 0.9195 | 0 | R | tRNA | A | 31 | PSU | 32 | U | 33 | G | 34 | C | 35 | A | 36 | MIA | 37 | A | 38 | PSU | 39 | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUAAACGAUAACG | 2 |
CUAAAAGGUAACG | 2 |
CGAAAAGAUAUCG | 1 |
CUAAAGAGUAACG | 1 |
CCAAAAUGUAACG | 1 |
A(PSU)UGCA(MIA)A(PSU) | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UAAACGAUAAC | 2 |
UAAAAGGUAAC | 2 |
GAAAAGAUAUC | 1 |
UAAAGAGUAAC | 1 |
CAAAAUGUAAC | 1 |
(PSU)UGCA(MIA)A | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-tSH-tHH-tWW-F
- Heat map statistics
- Min 0.08 | Avg 0.29 | Max 0.95
Coloring options: