Motif HL_20174.1 Version HL_20174.1 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_139 | 8P9A | 0.3317 | 1 | AR | LSU rRNA | C | 1239 | A | 1240 | U | 1241 | G | 1242 | G | 1243 | A | 1244 | G | 1246 | U | 1247 | C | 1248 | G | 1249 | ncWW | |
| 2 | HL_5D8H_001 | 5D8H | 0.0706 | 1 | A | LSU rRNA | C | 1174 | U | 1175 | U | 1176 | A | 1177 | G | 1178 | A | 1179 | G | 1181 | C | 1182 | A | 1183 | G | 1184 | cWW | |
| 3 | HL_1MMS_003 | 1MMS | 0.0000 | 1 | D | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 4 | HL_6PRV_001 | 6PRV | 0.0767 | 1 | A | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 5 | HL_7OSM_117 | 7OSM | 0.8577 | 0 | ASIT | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | U | 60 | C | 61 | C | 62 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 3 |
| CAUGGAAGUCG | 1 |
| GUUCGAUUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 3 |
| AUGGAAGUC | 1 |
| UUCGAUUC | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.38 | Max 0.93
Coloring options: