HL_22280.5

#S	Loop id	PDB	Disc	Annotation	Chain(s)		1		2		3		4		5		6		7		8		9	1-9	2-6
1	HL_4V9K_035	4V9K	0.3562	T-loop with 2 stacked bulged bases	AW	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
2	HL_3WFS_003	3WFS	0.1636	T-loop with 2 stacked bulged bases	A	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
3	HL_7UZ0_003	7UZ0	0.1368	T-loop with 2 stacked bulged bases	A	G	68	U	69	U	70	C	71	G	72	A	73	G	74	U	75	C	76	cWW	tWH
4	HL_4TUE_035	4TUE	0.1746	T-loop with 2 stacked bulged bases	QV	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	ncWW	tWH
5	HL_4GCW_002	4GCW	0.1069	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	G	57	A	58	G	59	C	60	C	61	cWW	tWH
6	HL_6CU1_001	6CU1	0.1906	T-loop with 2 stacked bulged bases	A	G	24	U	25	U	26	C	27	G	28	A	29	G	30	A	31	C	32	cWW	tWH
7	HL_7K98_003	7K98	0.1578	T-loop with 2 stacked bulged bases	C	G	54	U	55	U	56	C	57	G	58	A	59	U	60	C	61	C	62	cWW	tWH
8	HL_7EQJ_006	7EQJ	0.1597	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
9	HL_1QU2_003	1QU2	0.1618	T-loop with 2 stacked bulged bases	T	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
10	HL_1U0B_003	1U0B	0.1801	T-loop with 2 stacked bulged bases	A	G	53	U	54	U	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
11	HL_5B63_004	5B63	0.1854	T-loop with 2 stacked bulged bases	D	G	954	U	955	U	956	C	957	G	958	A	959	A	960	U	961	C	962	cWW	tWH
12	HL_3AKZ_012	3AKZ	0.2022	T-loop with 2 stacked bulged bases	E	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
13	HL_3EPH_003	3EPH	0.1720	T-loop with 2 stacked bulged bases	E	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
14	HL_1N78_003	1N78	0.1573	T-loop with 2 stacked bulged bases	C	G	553	U	554	U	555	C	556	G	557	A	558	U	559	U	560	C	561	cWW	tWH
15	HL_3TUP_003	3TUP	0.1568	T-loop with 2 stacked bulged bases	T	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	ntWH
16	HL_4V87_109	4V87	0.2294	T-loop with 2 stacked bulged bases	BB	G	64	U	65	U	66	C	67	A	68	A	69	G	70	U	71	C	72	cWW	ntWH
17	HL_6NWY_035	6NWY	0.2938	T-loop with 2 stacked bulged bases	QV	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	ntWH
18	HL_3VJR_001	3VJR	0.3194	T-loop with 2 bulged bases not stacked	B	G	13	U	14	U	15	C	16	G	17	A	18	U	19	C	20	C	21	cWW	tWH
19	HL_3OVB_001	3OVB	0.2215	T-loop with 2 stacked bulged bases	C	G	12	U	13	U	14	C	15	A	16	A	17	G	18	U	19	C	20	cWW	tWH
20	HL_7MDL_004	7MDL	0.1623	T-loop with 2 stacked bulged bases	E	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	U	59\|\|A	U	60\|\|A	C	61\|\|A	cWW	tWH
21	HL_2DRA_001	2DRA	0.2420	T-loop with 2 stacked bulged bases	B	G	12	U	13	U	14	C	15	G	16	A	17	U	18	U	19	C	20	cWW	tWH
22	HL_5UD5_003	5UD5	0.2388	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	A	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
23	HL_2D6F_006	2D6F	0.1965	T-loop with 2 stacked bulged bases	F	G	953	U	954	U	955	C	956	G	957	A	958	C	959	U	960	C	961	cWW	tWH
24	HL_7UQ6_003	7UQ6	0.1681	T-loop with 2 stacked bulged bases	B	G	64	U	65	U	66	C	67	G	68	A	69	G	70	U	71	C	72	cWW	tWH
25	HL_7YSE_003	7YSE	0.1860	T-loop with 2 stacked bulged bases	E	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
26	HL_1J2B_002	1J2B	0.3106	T-loop with 2 stacked bulged bases	C	G	954	U	955	U	956	C	957	A	958	A	959	G	960	U	961	C	962	cWW	tWH
27	HL_2CSX_003	2CSX	0.2558	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
28	HL_1GAX_006	1GAX	0.4828	T-loop with 2 stacked bulged bases	D	G	952	U	953	U	954	C	955	A	956	A	957	G	958	U	959	C	960	cWW	tWH
29	HL_4V8N_145	4V8N	0.2210	T-loop with 2 stacked bulged bases	CV	G	55	U	56	U	57	C	58	G	59	A	60	A	61	U	62	C	63	cWW	tWH
30	HL_2AZX_006	2AZX	0.1538	T-loop with 2 stacked bulged bases	D	G	553	U	554	U	555	C	556	G	557	A	558	A	559	U	560	C	561	ncWW	tWH
31	HL_4WJ4_003	4WJ4	0.1142	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
32	HL_7LYF_003	7LYF	0.1130	T-loop with 2 stacked bulged bases	A	G	116	U	117	U	118	C	119	A	120	A	121	G	122	U	123	C	124	cWW	tWH
33	HL_8UO6_004	8UO6	0.1222	T-loop with 2 stacked bulged bases	A	G	111	U	112	U	113	C	114	A	115	A	116	G	117	U	118	C	119	cWW	tWH
34	HL_8UO6_008	8UO6	0.1163	T-loop with 2 stacked bulged bases	B	G	111	U	112	U	113	C	114	A	115	A	116	G	117	U	118	C	119	cWW	tWH
35	HL_6JXM_003	6JXM	0.1004	T-loop with 2 stacked bulged bases	B	G	74	U	75	U	76	C	77	G	78	A	79	G	80	U	81	C	82	cWW	tWH
36	HL_3RG5_008	3RG5	0.0934	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	A	57	A	58	U	59	U	60	C	61	cWW	tWH
37	HL_4LCK_003	4LCK	0.0000	T-loop with 2 stacked bulged bases	B	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
38	HL_3ZGZ_003	3ZGZ	0.0761	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
39	HL_8G9Z_004	8G9Z	0.1036	T-loop with 2 stacked bulged bases	E	G	53\|\|A	U	54\|\|A	U	55\|\|A	C	56\|\|A	A	57\|\|A	A	58\|\|A	U	59\|\|A	U	60\|\|A	C	61\|\|A	cWW	tWH
40	HL_7E8O_003	7E8O	0.1181	T-loop with 2 stacked bulged bases	X	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
41	HL_3AL0_003	3AL0	0.1578	T-loop with 2 stacked bulged bases	E	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
42	HL_4V90_034	4V90	0.1461	T-loop with 2 stacked bulged bases	AV	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
43	HL_6PMO_005	6PMO	0.1687	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
44	HL_5X6B_003	5X6B	0.1551	T-loop with 2 stacked bulged bases	P	G	52	U	53	U	54	C	55	A	56	A	57	A	58	U	59	C	60	cWW	tWH
45	HL_2ZZM_004	2ZZM	0.1742	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
46	HL_5HR6_003	5HR6	0.1509	T-loop with 2 stacked bulged bases	C	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
47	HL_1QTQ_003	1QTQ	0.1599	T-loop with 2 stacked bulged bases	B	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
48	HL_8VU0_003	8VU0	0.1638	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
49	HL_4YYE_003	4YYE	0.1344	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
50	HL_5HR7_006	5HR7	0.1518	T-loop with 2 stacked bulged bases	D	G	52	U	53	U	54	C	55	G	56	A	57	A	58	U	59	C	60	cWW	tWH
51	HL_4JXZ_003	4JXZ	0.1435	T-loop with 2 stacked bulged bases	B	G	953	U	954	U	955	C	956	G	957	A	958	A	959	U	960	C	961	cWW	tWH
52	HL_1J1U_003	1J1U	0.1296	T-loop with 2 stacked bulged bases	B	G	554	U	555	U	556	C	557	A	558	A	559	A	560	U	561	C	562	cWW	tWH
53	HL_5AXM_003	5AXM	0.1426	T-loop with 2 stacked bulged bases	P	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
54	HL_4YCO_003	4YCO	0.1171	T-loop with 2 stacked bulged bases	D	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
55	HL_7MRL_003	7MRL	0.1282	T-loop with 2 stacked bulged bases	A	G	56	U	57	U	58	C	59	A	60	A	61	G	62	U	63	C	64	cWW	tWH
56	HL_2BTE_004	2BTE	0.1674	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
57	HL_5AH5_008	5AH5	0.1276	T-loop with 2 stacked bulged bases	D	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
58	HL_2ZUE_003	2ZUE	0.1250	T-loop with 2 stacked bulged bases	B	G	953	U	954	U	955	C	956	A	957	A	958	A	959	U	960	C	961	cWW	tWH
59	HL_7KJT_003	7KJT	0.1317	T-loop with 2 stacked bulged bases	A	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
60	HL_6UFM_003	6UFM	0.1306	T-loop with 2 stacked bulged bases	A	G	54	U	55	U	56	C	57	G	58	A	59	G	60	U	61	C	62	cWW	tWH
61	HL_4RDX_003	4RDX	0.1254	T-loop with 2 stacked bulged bases	C	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
62	HL_3WQY_003	3WQY	0.1154	T-loop with 2 stacked bulged bases	C	G	1653	U	1654	U	1655	C	1656	A	1657	A	1658	A	1659	U	1660	C	1661	cWW	tWH
63	HL_2ZZN_006	2ZZN	0.1389	T-loop with 2 stacked bulged bases	D	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
64	HL_8V1H_002	8V1H	0.3195	T-loop with 2 stacked bulged bases	A	G	38	U	39	U	40	C	41	A	42	A	43	A	44	U	45	C	46	cWW	tWH
65	HL_8S95_005	8S95	0.1705	T-loop with 2 stacked bulged bases	C	G	133	U	134	U	135	C	136	A	137	A	138	G	139	U	140	C	141	cWW	tWH
66	HL_4WT8_217	4WT8	0.1748	T-loop with 2 stacked bulged bases	D4	G	54	U	55	U	56	C	57	A	58	A	59	A	60	U	61	C	62	cWW	tWH
67	HL_4V9Q_215	4V9Q	0.1740	T-loop with 2 stacked bulged bases	DV	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
68	HL_1WZ2_008	1WZ2	0.1955	T-loop with 2 stacked bulged bases	D	G	965	U	966	U	967	C	968	G	969	A	970	A	971	U	972	C	973	cWW	tWH
69	HL_3AMU_003	3AMU	0.1872	T-loop with 2 stacked bulged bases	B	G	53	U	54	U	55	C	56	G	57	A	58	A	59	U	60	C	61	cWW	tWH
70	HL_2ZNI_003	2ZNI	0.3421	T-loop with 2 stacked bulged bases	C	G	53	U	54	G	55	A	56	A	57	A	58	C	59	U	60	C	61	cWW	tWH
71	HL_6ORD_037	6ORD	0.4270	T-loop with 2 stacked bulged bases	QY	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCAAGUC	15
GUUCGAAUC	14
GUUCAAAUC	12
GUUCGAGUC	9
GUUCGAUUC	6
GUUCGAUCC	6
GUUCAAUUC	3
GUUCGACUC	2
GUUCGAGCC	1
GUUCGAGAC	1
GUUAGAUUC	1
GUGAAACUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCAAGU	15
UUCGAAU	14
UUCAAAU	12
UUCGAGU	9
UUCGAUU	6
UUCGAUC	6
UUCAAUU	3
UUCGACU	2
UUCGAGC	1
UUCGAGA	1
UUAGAUU	1
UGAAACU	1

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_22280.5 Version HL_22280.5 of this group appears in releases 3.87 to 3.87 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_22280.5 Version HL_22280.5 of this group appears in releases 3.87 to 3.87

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Csv

Json