1 | HL_4V9K_035 | 4V9K | 0.3562 | 0 | T-loop with 2 stacked bulged bases | AW | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | A | 59 | U | 60 | C | 61 | cWW | ntWH | | |
2 | HL_3WFS_003 | 3WFS | 0.1636 | 0 | T-loop with 2 stacked bulged bases | A | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | U | 60 | C | 61 | cWW | tWH | | |
3 | HL_7UZ0_003 | 7UZ0 | 0.1368 | 0 | | A | tRNA | G | 68 | U | 69 | U | 70 | C | 71 | G | 72 | A | 73 | G | 74 | U | 75 | C | 76 | cWW | tWH | | |
4 | HL_4TUE_035 | 4TUE | 0.1746 | 0 | T-loop with 2 stacked bulged bases | QV | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | A | 59 | U | 60 | C | 61 | ncWW | tWH | | |
5 | HL_4GCW_002 | 4GCW | 0.1069 | 0 | T-loop with 2 stacked bulged bases | B | TRNA(THR) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | G | 59 | C | 60 | C | 61 | cWW | tWH | | |
6 | HL_6CU1_001 | 6CU1 | 0.1906 | 0 | T-loop with 2 stacked bulged bases | A | Y RNA-like | G | 24 | U | 25 | U | 26 | C | 27 | G | 28 | A | 29 | G | 30 | A | 31 | C | 32 | cWW | tWH | | |
7 | HL_7K98_003 | 7K98 | 0.1578 | 0 | | C | tRNA | G | 54 | U | 55 | U | 56 | C | 57 | G | 58 | A | 59 | U | 60 | C | 61 | C | 62 | cWW | tWH | | |
8 | HL_7EQJ_006 | 7EQJ | 0.1597 | 0 | | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | C | 60 | C | 61 | cWW | tWH | | |
9 | HL_1QU2_003 | 1QU2 | 0.1618 | 0 | T-loop with 2 stacked bulged bases | T | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
10 | HL_1U0B_003 | 1U0B | 0.1801 | 0 | T-loop with 2 stacked bulged bases | A | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 59 | U | 60 | C | 61 | cWW | tWH | | |
11 | HL_5B63_004 | 5B63 | 0.1854 | 0 | T-loop with 2 stacked bulged bases | D | tRNA | G | 954 | U | 955 | U | 956 | C | 957 | G | 958 | A | 959 | A | 960 | U | 961 | C | 962 | cWW | tWH | | |
12 | HL_3AKZ_012 | 3AKZ | 0.2022 | 0 | | E | tRNAGln | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
13 | HL_3EPH_003 | 3EPH | 0.1720 | 0 | T-loop with 2 stacked bulged bases | E | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | C | 60 | C | 61 | cWW | tWH | | |
14 | HL_1N78_003 | 1N78 | 0.1573 | 0 | T-loop with 2 stacked bulged bases | C | tRNA(Glu) | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | U | 559 | U | 560 | C | 561 | cWW | tWH | | |
15 | HL_3TUP_003 | 3TUP | 0.1568 | 0 | T-loop with 2 stacked bulged bases | T | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | U | 60 | C | 61 | cWW | tWH | | |
16 | HL_4V87_109 | 4V87 | 0.2294 | 0 | | BB | TRNA-LEU | G | 64 | U | 65 | U | 66 | C | 67 | A | 68 | A | 69 | G | 70 | U | 71 | C | 72 | cWW | tWH | | |
17 | HL_6NWY_035 | 6NWY | 0.2938 | 0 | | QV | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | A | 59 | U | 60 | C | 61 | cWW | tWH | | |
18 | HL_3VJR_001 | 3VJR | 0.3194 | 0 | Other HL | B | tRNA CCA-acceptor | G | 13 | U | 14 | U | 15 | C | 16 | G | 17 | A | 18 | U | 19 | C | 20 | C | 21 | cWW | tWH | | |
19 | HL_3OVB_001 | 3OVB | 0.2215 | 0 | T-loop with 2 stacked bulged bases | C | RNA (35-MER) | G | 12 | U | 13 | U | 14 | C | 15 | A | 16 | A | 17 | G | 18 | U | 19 | C | 20 | cWW | tWH | | |
20 | HL_7MDL_004 | 7MDL | 0.1623 | 0 | | E | RNA (90-MER) | G | 53||A | U | 54||A | U | 55||A | C | 56||A | A | 57||A | A | 58||A | U | 59||A | U | 60||A | C | 61||A | cWW | tWH | | |
21 | HL_2DRA_001 | 2DRA | 0.2420 | 0 | T-loop with 2 stacked bulged bases | B | tRNA (34-MER) | G | 12 | U | 13 | U | 14 | C | 15 | G | 16 | A | 17 | U | 18 | U | 19 | C | 20 | cWW | tWH | | |
22 | HL_5UD5_003 | 5UD5 | 0.2388 | 0 | T-loop with 2 stacked bulged bases | C | tRNA | G | 53 | U | 54 | U | 55 | A | 56 | G | 57 | A | 58 | U | 59 | U | 60 | C | 61 | cWW | tWH | | |
23 | HL_2D6F_006 | 2D6F | 0.1965 | 0 | T-loop with 2 stacked bulged bases | F | tRNA | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | C | 959 | U | 960 | C | 961 | cWW | tWH | | |
24 | HL_7UQ6_003 | 7UQ6 | 0.1681 | 0 | | B | tRNA | G | 64 | U | 65 | U | 66 | C | 67 | G | 68 | A | 69 | G | 70 | U | 71 | C | 72 | cWW | tWH | | |
25 | HL_7YSE_003 | 7YSE | 0.1860 | 0 | | E | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
26 | HL_1J2B_002 | 1J2B | 0.3106 | 0 | Other HL | C | tRNA(Val) | G | 954 | U | 955 | U | 956 | C | 957 | A | 958 | A | 959 | G | 960 | U | 961 | C | 962 | cWW | tWH | | |
27 | HL_2CSX_003 | 2CSX | 0.2558 | 0 | T-loop with 2 stacked bulged bases | C | RNA (75-MER) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
28 | HL_1GAX_006 | 1GAX | 0.4828 | 0 | T-loop with 2 stacked bulged bases | D | TRNA(VAL) | G | 952 | U | 953 | U | 954 | C | 955 | A | 956 | A | 957 | G | 958 | U | 959 | C | 960 | cWW | tWH | | |
29 | HL_4V8N_145 | 4V8N | 0.2210 | 0 | T-loop with 2 stacked bulged bases | CV | tRNA | G | 55 | U | 56 | U | 57 | C | 58 | G | 59 | A | 60 | A | 61 | U | 62 | C | 63 | cWW | tWH | | |
30 | HL_2AZX_006 | 2AZX | 0.1538 | 0 | T-loop with 2 stacked bulged bases | D | 72-MER | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | A | 559 | U | 560 | C | 561 | cWW | tWH | | |
31 | HL_4WJ4_003 | 4WJ4 | 0.1142 | 0 | T-loop with 2 stacked bulged bases | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
32 | HL_7LYF_003 | 7LYF | 0.1130 | 0 | | A | tRNA | G | 116 | U | 117 | U | 118 | C | 119 | A | 120 | A | 121 | G | 122 | U | 123 | C | 124 | cWW | tWH | | |
33 | HL_8UO6_004 | 8UO6 | 0.1222 | 0 | | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | G | 111 | U | 112 | U | 113 | C | 114 | A | 115 | A | 116 | G | 117 | U | 118 | C | 119 | cWW | tWH | | |
34 | HL_8UO6_008 | 8UO6 | 0.1163 | 0 | | B | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | G | 111 | U | 112 | U | 113 | C | 114 | A | 115 | A | 116 | G | 117 | U | 118 | C | 119 | cWW | tWH | | |
35 | HL_6JXM_003 | 6JXM | 0.1004 | 0 | T-loop with 2 stacked bulged bases | B | tRNA | G | 74 | U | 75 | U | 76 | C | 77 | G | 78 | A | 79 | G | 80 | U | 81 | C | 82 | cWW | tWH | | |
36 | HL_3RG5_008 | 3RG5 | 0.0934 | 0 | T-loop with 2 stacked bulged bases | B | Selenocysteine transfer RNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | U | 59 | U | 60 | C | 61 | cWW | tWH | | |
37 | HL_4LCK_003 | 4LCK | 0.0000 | 0 | T-loop with 2 stacked bulged bases | B | tRNA | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | A | 58 | U | 59 | C | 60 | cWW | tWH | | |
38 | HL_3ZGZ_003 | 3ZGZ | 0.0761 | 0 | T-loop with 2 stacked bulged bases | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
39 | HL_8G9Z_004 | 8G9Z | 0.1036 | 0 | | E | Selenocysteine transfer RNA | G | 53||A | U | 54||A | U | 55||A | C | 56||A | A | 57||A | A | 58||A | U | 59||A | U | 60||A | C | 61||A | cWW | tWH | | |
40 | HL_7E8O_003 | 7E8O | 0.1181 | 0 | | X | tRNA | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | A | 58 | U | 59 | C | 60 | cWW | tWH | | |
41 | HL_3AL0_003 | 3AL0 | 0.1578 | 0 | T-loop with 2 stacked bulged bases | E | tRNAGln | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
42 | HL_4V90_034 | 4V90 | 0.1461 | 0 | T-loop with 2 stacked bulged bases | AV | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | U | 60 | C | 61 | cWW | tWH | | |
43 | HL_6PMO_005 | 6PMO | 0.1687 | 0 | T-loop with 2 stacked bulged bases | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | A | 59 | U | 60 | C | 61 | cWW | tWH | | |
44 | HL_5X6B_003 | 5X6B | 0.1551 | 0 | T-loop with 2 stacked bulged bases | P | tRNA | G | 52 | U | 53 | U | 54 | C | 55 | A | 56 | A | 57 | A | 58 | U | 59 | C | 60 | cWW | tWH | | |
45 | HL_2ZZM_004 | 2ZZM | 0.1742 | 0 | T-loop with 2 stacked bulged bases | B | RNA (84-MER) | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | A | 59 | U | 60 | C | 61 | cWW | tWH | | |
46 | HL_5HR6_003 | 5HR6 | 0.1509 | 0 | T-loop with 2 stacked bulged bases | C | tRNA | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | A | 58 | U | 59 | C | 60 | cWW | tWH | | |
47 | HL_1QTQ_003 | 1QTQ | 0.1599 | 0 | T-loop with 2 stacked bulged bases | B | tRNA | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | A | 959 | U | 960 | C | 961 | cWW | tWH | | |
48 | HL_8VU0_003 | 8VU0 | 0.1638 | 0 | | C | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
49 | HL_4YYE_003 | 4YYE | 0.1344 | 0 | T-loop with 2 stacked bulged bases | C | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | A | 59 | U | 60 | C | 61 | cWW | tWH | | |
50 | HL_5HR7_006 | 5HR7 | 0.1518 | 0 | T-loop with 2 stacked bulged bases | D | tRNA | G | 52 | U | 53 | U | 54 | C | 55 | G | 56 | A | 57 | A | 58 | U | 59 | C | 60 | cWW | tWH | | |
51 | HL_4JXZ_003 | 4JXZ | 0.1435 | 0 | T-loop with 2 stacked bulged bases | B | RNA (71-MER) | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | A | 959 | U | 960 | C | 961 | cWW | tWH | | |
52 | HL_1J1U_003 | 1J1U | 0.1296 | 0 | T-loop with 2 stacked bulged bases | B | tRNA(Tyr) | G | 554 | U | 555 | U | 556 | C | 557 | A | 558 | A | 559 | A | 560 | U | 561 | C | 562 | cWW | tWH | | |
53 | HL_5AXM_003 | 5AXM | 0.1426 | 0 | T-loop with 2 stacked bulged bases | P | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | C | 60 | C | 61 | cWW | tWH | | |
54 | HL_4YCO_003 | 4YCO | 0.1171 | 0 | T-loop with 2 stacked bulged bases | D | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | U | 60 | C | 61 | cWW | tWH | | |
55 | HL_7MRL_003 | 7MRL | 0.1282 | 0 | | A | tRNA | G | 56 | U | 57 | U | 58 | C | 59 | A | 60 | A | 61 | G | 62 | U | 63 | C | 64 | cWW | tWH | | |
56 | HL_2BTE_004 | 2BTE | 0.1674 | 0 | T-loop with 2 stacked bulged bases | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
57 | HL_5AH5_008 | 5AH5 | 0.1276 | 0 | T-loop with 2 stacked bulged bases | D | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
58 | HL_2ZUE_003 | 2ZUE | 0.1250 | 0 | T-loop with 2 stacked bulged bases | B | tRNA-Arg | G | 953 | U | 954 | U | 955 | C | 956 | A | 957 | A | 958 | A | 959 | U | 960 | C | 961 | cWW | tWH | | |
59 | HL_7KJT_003 | 7KJT | 0.1317 | 0 | | A | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | A | 59 | U | 60 | C | 61 | cWW | tWH | | |
60 | HL_6UFM_003 | 6UFM | 0.1306 | 0 | T-loop with 2 stacked bulged bases | A | tRNA | G | 54 | U | 55 | U | 56 | C | 57 | G | 58 | A | 59 | G | 60 | U | 61 | C | 62 | cWW | tWH | | |
61 | HL_4RDX_003 | 4RDX | 0.1254 | 0 | T-loop with 2 stacked bulged bases | C | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | G | 59 | U | 60 | C | 61 | cWW | tWH | | |
62 | HL_3WQY_003 | 3WQY | 0.1154 | 0 | T-loop with 2 stacked bulged bases | C | tRNA | G | 1653 | U | 1654 | U | 1655 | C | 1656 | A | 1657 | A | 1658 | A | 1659 | U | 1660 | C | 1661 | cWW | tWH | | |
63 | HL_2ZZN_006 | 2ZZN | 0.1389 | 0 | T-loop with 2 stacked bulged bases | D | RNA (71-MER) | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | A | 59 | U | 60 | C | 61 | cWW | tWH | | |
64 | HL_8V1H_002 | 8V1H | 0.3195 | 0 | | A | pre-mascRNA | G | 38 | U | 39 | U | 40 | C | 41 | A | 42 | A | 43 | A | 44 | U | 45 | C | 46 | cWW | tWH | | |
65 | HL_8S95_005 | 8S95 | 0.1705 | 0 | | C | Lysine tRNA scaffold,Poliovirus cloverleaf RNA | G | 133 | U | 134 | U | 135 | C | 136 | A | 137 | A | 138 | G | 139 | U | 140 | C | 141 | cWW | tWH | | |
66 | HL_4WT8_217 | 4WT8 | 0.1748 | 0 | T-loop with 2 stacked bulged bases | D4 | tRNA | G | 54 | U | 55 | U | 56 | C | 57 | A | 58 | A | 59 | A | 60 | U | 61 | C | 62 | cWW | tWH | | |
67 | HL_4V9Q_215 | 4V9Q | 0.1740 | 0 | T-loop with 2 stacked bulged bases | DV | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | A | 59 | U | 60 | C | 61 | cWW | tWH | tSH | |
68 | HL_1WZ2_008 | 1WZ2 | 0.1955 | 0 | T-loop with 2 stacked bulged bases | D | tRNA | G | 965 | U | 966 | U | 967 | C | 968 | G | 969 | A | 970 | A | 971 | U | 972 | C | 973 | cWW | tWH | | |
69 | HL_3AMU_003 | 3AMU | 0.1872 | 0 | T-loop with 2 stacked bulged bases | B | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | A | 59 | U | 60 | C | 61 | cWW | tWH | | ntWH |
70 | HL_2ZNI_003 | 2ZNI | 0.3421 | 0 | T-loop with 2 stacked bulged bases | C | bacterial tRNA | G | 53 | U | 54 | G | 55 | A | 56 | A | 57 | A | 58 | C | 59 | U | 60 | C | 61 | cWW | ntWH | | |
71 | HL_6ORD_037 | 6ORD | 0.4270 | 0 | | QY | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | U | 59 | C | 60 | C | 61 | cWW | | | |