Motif HL_22622.1 Version HL_22622.1 of this group appears in releases 3.91 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DFE_035 | 9DFE | 0.0000 | 2 | Mini UNCG with extended bulge (H) | 1A | LSU rRNA | C | 1451 | G | 1455 | G | 1456 | A | 1457 | C | 1458 | G | 1459 | cWW |
| 2 | HL_5J7L_169 | 5J7L | 0.6524 | 3 | Mini UNCG with extended bulge | DA | LSU rRNA | C | 1451 | G | 1455 | G | 1456 | U | 1457 | U | 1458 | G | 1459 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGGACG | 1 |
| CGACGGUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGGAC | 1 |
| GACGGUU | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Mini UNCG with extended bulge (1)
- Mini UNCG with extended bulge (H) (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.65 | Avg 0.33 | Max 0.65
Coloring options: