Motif HL_23337.1 Version HL_23337.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QK9_003 | 4QK9 | 0.0000 | 2 | A | C-di-AMP riboswitch | U | 72 | U | 75 | C | 76 | U | 77 | C | 78 | U | 79 | U | 80 | U | 81 | C | 82 | G | 83 | cWW | cSH |
| 2 | HL_4R0D_002 | 4R0D | 0.7797 | 1 | A | Group II catalytic intron | G | 48 | A | 50 | U | 51 | C | 52 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | U | 58 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUCUCUUUCG | 1 |
| GAAUCGUUCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUCUCUUUC | 1 |
| AAUCGUUCA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_23337.1 | Only in the parent motif |
|---|---|---|---|
| HL_92594.1 Compare | HL_4QK9_003 | HL_4R0D_002 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.78 | Avg 0.39 | Max 0.78
Coloring options: