1 | HL_2A64_002 | 2A64 | 0.2998 | 1 | T-loop with 2 stacked bulged bases | A | ribonuclease P RNA | C | 69 | U | 70 | G | 71 | A | 72 | G | 73 | A | 74 | G | 76 | cWW | tWH |
2 | HL_6CZR_100 | 6CZR | 0.2343 | 3 | T-loop with 3 stacked bulged bases | 1a | SSU rRNA | C | 1296 | U | 1297 | G | 1298 | C | 1299 | A | 1300 | A | 1301 | G | 1305 | cWW | ntWH |
3 | HL_4LFB_029 | 4LFB | 0.2408 | 3 | T-loop with 3 stacked bulged bases | A | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | G | 1323 | cWW | tWH |
4 | HL_5J7L_028 | 5J7L | 0.2617 | 3 | T-loop with 3 stacked bulged bases | AA | SSU rRNA | C | 1314 | U | 1315 | G | 1316 | C | 1317 | A | 1318 | A | 1319 | G | 1323 | cWW | tWH |
5 | HL_8VTW_009 | 8VTW | 0.2315 | 1 | T-loop with 1 bulged base | 1A | LSU rRNA | U | 305 | U | 306 | G | 307 | G | 308 | G | 309 | A | 310 | G | 312 | cWW | tWH |
6 | HL_4GXY_002 | 4GXY | 0.2090 | 2 | T-loop with 2 stacked bulged bases | A | Adenosylcobalamin riboswitch | G | 49 | U | 50 | G | 51 | C | 52 | A | 53 | A | 54 | C | 57 | cWW | tWH |
7 | HL_8VT5_003 | 8VT5 | 0.1630 | 2 | T-loop with 2 stacked bulged bases | A | menRNA | G | 40 | U | 41 | U | 42 | C | 43 | G | 44 | A | 45 | C | 48 | cWW | ntWH |
8 | HL_8V1I_006 | 8V1I | 0.1884 | 2 | T-loop with 2 stacked bulged bases | B | mascRNA | G | 38 | U | 39 | U | 40 | C | 41 | A | 42 | A | 43 | C | 46 | cWW | tWH |
9 | HL_4V9F_034 | 4V9F | 0.1738 | 2 | T-loop with 2 stacked bulged bases | 0 | LSU rRNA | G | 1387 | U | 1388 | G | 1389 | A | 1390 | G | 1391 | A | 1392 | C | 1395 | cWW | tWH |
10 | HL_7A0S_032 | 7A0S | 0.1829 | 2 | T-loop with 2 stacked bulged bases | X | LSU rRNA | G | 1294 | U | 1295 | G | 1296 | A | 1297 | G | 1298 | A | 1299 | C | 1302 | cWW | tWH |
11 | HL_8VTW_032 | 8VTW | 0.1922 | 2 | T-loop with 2 stacked bulged bases | 1A | LSU rRNA | G | 1281 | U | 1282 | G | 1283 | A | 1284 | G | 1285 | A | 1286 | C | 1289 | cWW | tWH |
12 | HL_4WF9_032 | 4WF9 | 0.2063 | 2 | T-loop with 2 stacked bulged bases | X | LSU rRNA | G | 1318 | U | 1319 | G | 1320 | A | 1321 | G | 1322 | A | 1323 | C | 1326 | cWW | tWH |
13 | HL_8C3A_031 | 8C3A | 0.1503 | 2 | T-loop with 2 stacked bulged bases | 1 | LSU rRNA | A | 1458 | U | 1459 | G | 1460 | A | 1461 | G | 1462 | A | 1463 | U | 1466 | cWW | tWH |
14 | HL_5TBW_031 | 5TBW | 0.1719 | 2 | T-loop with 2 stacked bulged bases | 1 | LSU rRNA | A | 1462 | U | 1463 | G | 1464 | A | 1465 | G | 1466 | A | 1467 | U | 1470 | cWW | tWH |
15 | HL_5TBW_005 | 5TBW | 0.1810 | 1 | T-loop with 2 stacked bulged bases | 1 | LSU rRNA | U | 194 | U | 195 | G | 196 | G | 197 | A | 198 | A | 199 | A | 201 | cWW | tWH |
16 | HL_8C3A_005 | 8C3A | 0.1602 | 1 | T-loop with 2 stacked bulged bases | 1 | LSU rRNA | U | 193 | U | 194 | G | 195 | G | 196 | A | 197 | A | 198 | A | 200 | cWW | tWH |
17 | HL_4V9F_010 | 4V9F | 0.1181 | 1 | T-loop with 2 stacked bulged bases | 0 | LSU rRNA | U | 312 | U | 313 | G | 314 | G | 315 | A | 316 | A | 317 | A | 319 | cWW | tWH |
18 | HL_6MJ0_009 | 6MJ0 | 0.1875 | 2 | T-loop with 2 stacked bulged bases | B | tRNA-like 3' UTR element | G | 66 | U | 67 | G | 68 | C | 69 | A | 70 | A | 71 | C | 74 | cWW | tWH |
19 | HL_6DN2_001 | 6DN2 | 0.0808 | 2 | T-loop with 2 bulged bases not stacked | X | RNA RIBOSWITCH | G | 17 | U | 18 | G | 19 | A | 20 | A | 21 | A | 22 | C | 25 | cWW | tWH |
20 | HL_5C45_001 | 5C45 | 0.0663 | 2 | T-loop with 2 bulged bases not stacked | X | FMN Riboswitch | G | 17 | U | 18 | G | 19 | A | 20 | A | 21 | A | 22 | C | 25 | cWW | tWH |
21 | HL_3F2X_001 | 3F2X | 0.0000 | 2 | T-loop with 2 bulged bases not stacked | X | FMN riboswitch | G | 17 | U | 18 | G | 19 | A | 20 | A | 21 | A | 22 | C | 25 | cWW | tWH |
22 | HL_5C45_003 | 5C45 | 0.0913 | 2 | T-loop with 2 bulged bases not stacked | Y | FMN Riboswitch | G | 68 | U | 69 | G | 70 | A | 71 | A | 72 | A | 73 | C | 76 | cWW | tWH |
23 | HL_6DN2_003 | 6DN2 | 0.1097 | 2 | T-loop with 2 bulged bases not stacked | Y | RNA (56-MER) | G | 68 | U | 69 | G | 70 | A | 71 | A | 72 | A | 73 | C | 76 | cWW | tWH |
24 | HL_3F2X_004 | 3F2X | 0.1154 | 2 | T-loop with 2 bulged bases not stacked | X | FMN riboswitch | G | 68 | U | 69 | G | 70 | A | 71 | A | 72 | A | 73 | C | 76 | cWW | tWH |
25 | HL_4FRG_001 | 4FRG | 0.1179 | 2 | T-loop with 2 bulged bases not stacked | B | cobalamin riboswitch aptamer domain | G | 28 | U | 29 | G | 30 | A | 31 | A | 32 | A | 33 | C | 36 | cWW | tWH |
26 | HL_4FRN_005 | 4FRN | 0.1386 | 2 | T-loop with 2 bulged bases not stacked | B | Cobalamin riboswitch aptamer domain | G | 28 | U | 29 | G | 30 | U | 31 | A | 32 | A | 33 | C | 36 | cWW | tWH |
27 | HL_5Y85_003 | 5Y85 | 0.1395 | 2 | T-loop with 2 stacked bulged bases | D | DNA/RNA (50-MER) | G | 11 | U | 12 | G | 13 | C | 14 | A | 15 | A | 16 | C | 19 | cWW | tWH |
28 | HL_5DH6_002 | 5DH6 | 0.1374 | 1 | T-loop with 2 stacked bulged bases | A | hammerhead ribozyme | C | 27 | U | 28 | G | 29 | G | 30 | G | 31 | A | 32 | G | 34 | cWW | tWH |
29 | HL_5J7L_142 | 5J7L | 0.1271 | 1 | T-loop with 2 stacked bulged bases | DA | LSU rRNA | C | 305 | U | 306 | G | 307 | G | 308 | A | 309 | A | 310 | G | 312 | cWW | tWH |
30 | HL_7A0S_010 | 7A0S | 0.1277 | 1 | T-loop with 1 bulged base | X | LSU rRNA | C | 316 | U | 317 | G | 318 | G | 319 | A | 320 | A | 321 | G | 323 | cWW | tWH |
31 | HL_5T5A_001 | 5T5A | 0.1655 | 2 | T-loop with 2 stacked bulged bases | A | DNA/RNA (71-MER) | G | 21 | U | 22 | G | 23 | C | 24 | A | 25 | A | 26 | C | 29 | cWW | tWH |
32 | HL_4WF9_010 | 4WF9 | 0.2030 | 1 | T-loop with 2 stacked bulged bases | X | LSU rRNA | C | 348 | U | 349 | G | 350 | G | 351 | A | 352 | A | 353 | G | 355 | cWW | tWH |
33 | HL_4WF9_018 | 4WF9 | 0.2419 | 3 | T-loop with 2 stacked bulged bases | X | LSU rRNA | U | 609 | U | 610 | U | 611 | U | 612 | G | 613 | U | 614 | A | 618 | cWW | |
34 | HL_5J7L_150 | 5J7L | 0.2611 | 3 | T-loop with 2 stacked bulged bases | DA | LSU rRNA | U | 566 | U | 567 | U | 568 | U | 569 | G | 570 | U | 571 | A | 575 | cWW | |
35 | HL_8VTW_017 | 8VTW | 0.2757 | 3 | T-loop with 2 stacked bulged bases | 1A | LSU rRNA | U | 566 | A | 567 | U | 568 | U | 569 | G | 570 | A | 571 | A | 575 | cWW | |
36 | HL_7A0S_018 | 7A0S | 0.3096 | 3 | T-loop with 2 stacked bulged bases | X | LSU rRNA | U | 575 | A | 576 | U | 577 | U | 578 | G | 579 | A | 580 | A | 584 | cWW | |
37 | HL_5TBW_014 | 5TBW | 0.3229 | 3 | T-loop with 2 stacked bulged bases | 1 | LSU rRNA | U | 640 | C | 641 | U | 642 | U | 643 | G | 644 | A | 645 | A | 649 | cWW | |
38 | HL_8C3A_014 | 8C3A | 0.2938 | 3 | T-loop with 2 stacked bulged bases | 1 | LSU rRNA | U | 638 | C | 639 | U | 640 | U | 641 | G | 642 | A | 643 | A | 647 | cWW | |
39 | HL_4V9F_018 | 4V9F | 0.2701 | 3 | T-loop with 2 stacked bulged bases | 0 | LSU rRNA | U | 623 | U | 624 | U | 625 | U | 626 | G | 627 | 1MA | 628 | A | 632 | cWW | ntWH |
40 | HL_7U2I_105 | 7U2I | 0.2960 | 2 | T-loop with 2 stacked bulged bases | 1w | tRNA | G | 53 | 5MU | 54 | PSU | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH |