#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 41-42-32-43-4
1 HL_4M6D_0044M6D1.16271 HaptamerC32U33A35G36cWWcWS
2 HL_4M4O_0014M4O1.16901 BRNA (59-MER)C32U33A35G36cWWcWS
3 HL_2ZUE_0012ZUE0.71728 BtRNA-ArgU913A914A921G922cWWcWS
4 HL_3AMU_0013AMU0.39998 B tRNAU13A14A21|||CG22cWWncWS
5 HL_1J1U_0011J1U0.70497 BtRNA(Tyr)C513A514A522G523cWWncWS
6 HL_6JXM_0016JXM0.19525 B tRNAC13A14A20G21cWWncWS
7 HL_3EPH_0013EPH0.00005 EtRNAC13A14A21G22cWWcWS
8 HL_2AZX_0042AZX0.15105 D72-MERC513A514A521G522cWWcWS
9 HL_3TUP_0013TUP0.21866 T tRNAC13A14A21G22cWWncWS
10 HL_3FOZ_0043FOZ0.28186 DtRNA(Phe)C13A14A21G22cWWcWS
11 HL_7MRL_0017MRL0.21636 A tRNAC13A14A21G22cWWncWS
12 HL_7LYF_0017LYF0.22116 A tRNAC13A14A21G22cWWncWS
13 HL_5AXM_0015AXM0.45916 P tRNAC13A14A21G22cWWncWS
14 HL_8SP9_0018SP90.28516 CtRNA scaffold,CVB3 Cloverleaf RNAC13A14A21G22cWWncWS
15 HL_4TUE_0334TUE0.24457 QV tRNAC12A13A21G22cWWcWS
16 HL_6CFJ_1066CFJ0.74917 1x tRNAC13A14A21G22cWWcWS
17 HL_5B63_0035B630.25107 D tRNAC913A914A922G923cWWncWS
18 HL_4WT8_2154WT80.63537 D4 tRNAC13A14A22G23cWWncWS
19 HL_3AL0_0013AL00.27395 EtRNAGlnU13A14A21G22cWWcWS
20 HL_4V9Q_2134V9Q0.67987 DV tRNAC13A14A21G22cWWncSH
21 HL_8C3A_0128C3A0.65344 1 LSU rRNAG539C540C543C546cWWncWw

3D structures

Complete motif including flanking bases
SequenceCounts
CAGCCUGGUAG5
CAGUCGGUAG4
CUUAG2
CAGUGGUAG2
UAGCCAGGACAG1
UAGCCAGGUCAG1
CAAUGGUAG1
CAGUUGGUAG1
CAGUUGGGAG1
CAAUUGGAUAG1
UAACGGUAG1
GCUUCUGC1
Non-Watson-Crick part of the motif
SequenceCounts
AGCCUGGUA5
AGUCGGUA4
UUA2
AGUGGUA2
AGCCAGGACA1
AGCCAGGUCA1
AAUGGUA1
AGUUGGUA1
AGUUGGGA1
AAUUGGAUA1
AACGGUA1
CUUCUG1

Release history

Release3.803.813.823.83
Date2024-01-312024-02-282024-03-272024-04-24
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
Basepair signature
cWW-cWS
Heat map statistics
Min 0.08 | Avg 0.50 | Max 1.36
Help

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