Motif HL_25462.2 Version HL_25462.2 of this group appears in releases 3.80 to 3.83
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | 2-4 | 3-4 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4M6D_004 | 4M6D | 1.1627 | 1 | H | aptamer | C | 32 | U | 33 | A | 35 | G | 36 | cWW | cWS | |||
2 | HL_4M4O_001 | 4M4O | 1.1690 | 1 | B | RNA (59-MER) | C | 32 | U | 33 | A | 35 | G | 36 | cWW | cWS | |||
3 | HL_2ZUE_001 | 2ZUE | 0.7172 | 8 | B | tRNA-Arg | U | 913 | A | 914 | A | 921 | G | 922 | cWW | cWS | |||
4 | HL_3AMU_001 | 3AMU | 0.3999 | 8 | B | tRNA | U | 13 | A | 14 | A | 21|||C | G | 22 | cWW | ncWS | |||
5 | HL_1J1U_001 | 1J1U | 0.7049 | 7 | B | tRNA(Tyr) | C | 513 | A | 514 | A | 522 | G | 523 | cWW | ncWS | |||
6 | HL_6JXM_001 | 6JXM | 0.1952 | 5 | B | tRNA | C | 13 | A | 14 | A | 20 | G | 21 | cWW | ncWS | |||
7 | HL_3EPH_001 | 3EPH | 0.0000 | 5 | E | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | cWS | |||
8 | HL_2AZX_004 | 2AZX | 0.1510 | 5 | D | 72-MER | C | 513 | A | 514 | A | 521 | G | 522 | cWW | cWS | |||
9 | HL_3TUP_001 | 3TUP | 0.2186 | 6 | T | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | ncWS | |||
10 | HL_3FOZ_004 | 3FOZ | 0.2818 | 6 | D | tRNA(Phe) | C | 13 | A | 14 | A | 21 | G | 22 | cWW | cWS | |||
11 | HL_7MRL_001 | 7MRL | 0.2163 | 6 | A | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | ncWS | |||
12 | HL_7LYF_001 | 7LYF | 0.2211 | 6 | A | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | ncWS | |||
13 | HL_5AXM_001 | 5AXM | 0.4591 | 6 | P | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | ncWS | |||
14 | HL_8SP9_001 | 8SP9 | 0.2851 | 6 | C | tRNA scaffold,CVB3 Cloverleaf RNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | ncWS | |||
15 | HL_4TUE_033 | 4TUE | 0.2445 | 7 | QV | tRNA | C | 12 | A | 13 | A | 21 | G | 22 | cWW | cWS | |||
16 | HL_6CFJ_106 | 6CFJ | 0.7491 | 7 | 1x | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | cWS | |||
17 | HL_5B63_003 | 5B63 | 0.2510 | 7 | D | tRNA | C | 913 | A | 914 | A | 922 | G | 923 | cWW | ncWS | |||
18 | HL_4WT8_215 | 4WT8 | 0.6353 | 7 | D4 | tRNA | C | 13 | A | 14 | A | 22 | G | 23 | cWW | ncWS | |||
19 | HL_3AL0_001 | 3AL0 | 0.2739 | 5 | E | tRNAGln | U | 13 | A | 14 | A | 21 | G | 22 | cWW | cWS | |||
20 | HL_4V9Q_213 | 4V9Q | 0.6798 | 7 | DV | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | ncSH | |||
21 | HL_8C3A_012 | 8C3A | 0.6534 | 4 | 1 | LSU rRNA | G | 539 | C | 540 | C | 543 | C | 546 | cWW | ncWw |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAGCCUGGUAG | 5 |
CAGUCGGUAG | 4 |
CUUAG | 2 |
CAGUGGUAG | 2 |
UAGCCAGGACAG | 1 |
UAGCCAGGUCAG | 1 |
CAAUGGUAG | 1 |
CAGUUGGUAG | 1 |
CAGUUGGGAG | 1 |
CAAUUGGAUAG | 1 |
UAACGGUAG | 1 |
GCUUCUGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AGCCUGGUA | 5 |
AGUCGGUA | 4 |
UUA | 2 |
AGUGGUA | 2 |
AGCCAGGACA | 1 |
AGCCAGGUCA | 1 |
AAUGGUA | 1 |
AGUUGGUA | 1 |
AGUUGGGA | 1 |
AAUUGGAUA | 1 |
AACGGUA | 1 |
CUUCUG | 1 |
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