Motif HL_25847.2 Version HL_25847.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 3-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_047 | 8CRE | 0.1563 | 1 | 1 | LSU rRNA | G | 2231 | U | 2232 | A | 2233 | C | 2235 | U | 2236 | A | 2237 | U | 2238 | G | 2239 | A | 2240 | C | 2241 | cWW | tHW | |
| 2 | HL_9DFE_046 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | G | 1910 | PSU | 1911 | A | 1912 | C | 1914 | 5MU | 1915 | A | 1916 | PSU | 1917 | A | 1918 | A | 1919 | OMC | 1920 | cWW | tHW | ncSH |
| 3 | HL_5J7L_181 | 5J7L | 0.3994 | 1 | DA | LSU rRNA | G | 1910 | PSU | 1911 | A | 1912 | C | 1914 | 3TD | 1915 | A | 1916 | PSU | 1917 | A | 1918 | A | 1919 | C | 1920 | cWW | tHW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACUAUGAC | 1 |
| G(PSU)AAC(5MU)A(PSU)AA(OMC) | 1 |
| GAACAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACUAUGA | 1 |
| (PSU)AAC(5MU)A(PSU)AA | 1 |
| (PSU)AAC(3TD)A(PSU)AA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Heat map statistics
- Min 0.16 | Avg 0.21 | Max 0.41
Coloring options: