Motif HL_31286.2 Version HL_31286.2 of this group appears in releases 3.12 to 3.32
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3MJA_001 | 3MJA | 0.7120 | 1 | B | Domain 3 of the cricket paralysis virus intergenic region IRES RNA | A | 6184 | U | 6185 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | ||
| 2 | HL_4V83_139 | 4V83 | 0.7019 | 1 | CV | domain 3 of PSIC IGR IRES RNA | A | 6160 | U | 6161 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | U | 6169 | cWW | ncWW | |
| 3 | HL_5TPY_005 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28 | U | 29 | G | 31 | G | 32 | G | 33 | G | 34 | A | 35 | A | 36 | G | 38 | cWW | tWH | |
| 4 | HL_5TPY_008 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28||||4_655 | U | 29||||4_655 | G | 31||||4_655 | G | 32||||4_655 | G | 33||||4_655 | G | 34||||4_655 | A | 35||||4_655 | A | 36||||4_655 | G | 38||||4_655 | cWW | tWH | |
| 5 | HL_5TPY_011 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28||||8_555 | U | 29||||8_555 | G | 31||||8_555 | G | 32||||8_555 | G | 33||||8_555 | G | 34||||8_555 | A | 35||||8_555 | A | 36||||8_555 | G | 38||||8_555 | cWW | tWH | |
| 6 | HL_5TPY_002 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28||||11_655 | U | 29||||11_655 | G | 31||||11_655 | G | 32||||11_655 | G | 33||||11_655 | G | 34||||11_655 | A | 35||||11_655 | A | 36||||11_655 | G | 38||||11_655 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGGGGAAAG | 4 |
| AUUAGGUAGU | 1 |
| AUUAAGUGGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGGGAAA | 4 |
| UUAGGUAG | 1 |
| UUAAGUGG | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWH-R-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.33 | Max 0.71
Coloring options: