Motif HL_32617.2 Version HL_32617.2 of this group appears in releases 3.62 to 3.62
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5F9R_004 | 5F9R | 0.4165 | 0 | CRISPR-Cas9 crRNA hairpin 4 | A | RNA (116-MER) | G | 105 | A | 106 | G | 107 | U | 108 | C | 109 | cWW | ncSH |
| 2 | HL_3RG5_005 | 3RG5 | 0.0000 | 1 | tRNA Sec D-loop | B | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 3 | HL_4ZDO_001 | 4ZDO | 0.2448 | 1 | tRNA Sec D-loop | E | Selenocysteine transfer RNA | G | 15||A | U | 16||A | G | 19||A | U | 20||A | C | 20||A|A | cWW | cSH |
| 4 | HL_3W3S_001 | 3W3S | 0.3372 | 1 | tRNA Sec D-loop | B | Selenocysteine transfer RNA | C | 15 | U | 16 | G | 19 | U | 20 | G | 20|||A | cWW | cSH |
| 5 | HL_3AM1_001 | 3AM1 | 0.3039 | 1 | tRNA Sec D-loop | B | ASL-truncated tRNA | U | 18 | U | 19 | G | 21 | U | 22 | A | 23 | cWW | cSH |
| 6 | HL_3ADD_001 | 3ADD | 0.3053 | 1 | tRNA Sec D-loop | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGUC | 3 |
| GAGUC | 1 |
| CUGGUG | 1 |
| UUGGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGU | 5 |
| AGU | 1 |
Release history
| Release | 3.62 |
|---|---|
| Date | 2022-10-12 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA Sec D-loop (5)
- CRISPR-Cas9 crRNA hairpin 4 (1)
- Basepair signature
- cWW-cSH
- Heat map statistics
- Min 0.19 | Avg 0.31 | Max 0.55
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