Motif HL_33074.2 Version HL_33074.2 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	1-10
1	HL_3MXH_002	3MXH	0.3704	2	U1 small nuclear ribonucleoprotein A binding hairpin	R	c-di-GMP riboswitch	C	65	A	660	U	661	U	662	G	663	A	665	C	666	C	668	C	669	G	75	cWW
2	HL_5DDO_002	5DDO	0.3308	2	U1 small nuclear ribonucleoprotein A binding hairpin	A	L-glutamine riboswitch (58-MER)	C	34	A	35	U	36	U	37	G	38	A	40	C	41	C	43	C	44	G	45	cWW
3	HL_8GXB_001	8GXB	0.2261	2	U1 small nuclear ribonucleoprotein A binding hairpin	A	NAD+ II riboswitch	C	23	A	24	U	25	U	26	G	27	A	29	C	30	C	32	C	33	G	34	cWW
4	HL_1U6B_003	1U6B	0.2132	2	U1 small nuclear ribonucleoprotein A binding hairpin	B	197-MER	C	1002	A	1003	U	1004	U	1005	G	1006	A	1008	C	1009	C	1011	C	1012	G	1013	cWW
5	HL_8JY0_001	8JY0	0.0939	2	U1 small nuclear ribonucleoprotein A binding hairpin	B	RhoBAST	C	13	A	14	U	15	U	16	G	17	A	19	C	20	C	22	C	23	G	24	cWW
6	HL_4C4W_002	4C4W	0.0000	2	U1 small nuclear ribonucleoprotein A binding hairpin	H	TSKT-23	C	11	A	12	U	13	U	14	G	15	A	17	C	18	C	20	C	21	G	22	cWW
7	HL_5FJ4_002	5FJ4	0.1085	2	U1 small nuclear ribonucleoprotein A binding hairpin	H	HMKT-7	C	11	A	12	U	13	U	14	G	15	A	17	C	18	C	20	C	21	G	22	cWW
8	HL_3G9C_005	3G9C	0.1798	2	U1 small nuclear ribonucleoprotein A binding hairpin	Q	GLMS RIBOZYME	C	17\|\|\|A	A	17\|\|\|B	U	17\|\|\|C	U	17\|\|\|D	G	17\|\|\|E	A	17\|\|\|G	C	17\|\|\|H	C	17\|\|\|J	C	17\|\|\|K	G	17\|\|\|L	cWW
9	HL_7QR4_002	7QR4	0.1810	2	U1 small nuclear ribonucleoprotein A binding hairpin	B	RNA CPEB3 ribozyme	C	43	A	44	U	45	U	46	G	47	A	49	C	50	C	52	C	53	G	54	cWW
10	HL_3CUL_002	3CUL	0.2291	2	U1 small nuclear ribonucleoprotein A binding hairpin	C	RNA (92-MER)	C	29	A	30	U	31	U	32	G	33	A	35	C	36	C	38	C	39	G	40	cWW
11	HL_3HHN_008	3HHN	0.2303	2	U1 small nuclear ribonucleoprotein A binding hairpin	E	Class I ligase ribozyme, self-ligation product	C	1004	A	1005	U	1006	U	1007	G	1008	A	1010	C	1011	C	1013	C	1014	G	1015	cWW
12	HL_7D7V_001	7D7V	0.2736	2	U1 small nuclear ribonucleoprotein A binding hairpin	A	nadA RNA	C	27	A	28	U	29	U	30	G	31	A	33	C	34	C	36	C	37	G	38	cWW
13	HL_6F4H_001	6F4H	0.1741	2	U1 small nuclear ribonucleoprotein A binding hairpin	B	U1-SL2	C	6	A	7	U	8	U	9	G	10	A	12	C	13	U	15	C	16	G	17	cWW
14	HL_6F4H_002	6F4H	0.1885	2	U1 small nuclear ribonucleoprotein A binding hairpin	D	U1-SL2	C	6	A	7	U	8	U	9	G	10	A	12	C	13	U	15	C	16	G	17	cWW
15	HL_7QR3_002	7QR3	0.2401	2	U1 small nuclear ribonucleoprotein A binding hairpin	C	chimpanzee CPEB3 ribozyme	C	43	A	44	U	45	U	46	G	47	A	49	C	50	C	52	C	53	G	54	cWW
16	HL_8GXB_002	8GXB	0.1990	2	U1 small nuclear ribonucleoprotein A binding hairpin	B	NAD+ II riboswitch	C	23	A	24	U	25	U	26	G	27	A	29	C	30	C	32	C	33	G	34	cWW
17	HL_7DLZ_001	7DLZ	0.1746	2	U1 small nuclear ribonucleoprotein A binding hairpin	X	RNA (45-MER)	C	18	A	19	U	20	U	21	G	22	A	24	C	25	C	27	C	28	G	29	cWW
18	HL_4PKD_001	4PKD	0.2032	2	U1 small nuclear ribonucleoprotein A binding hairpin	V	U1 snRNA stem-loops 1 and 2 (55-MER)	C	64	A	65	U	66	U	67	G	68	A	70	C	71	C	73	C	74	G	75	cWW
19	HL_5DDP_002	5DDP	0.1467	2	U1 small nuclear ribonucleoprotein A binding hairpin	A	glnA	C	34	A	35	U	36	U	37	G	38	A	40	C	41	C	43	C	44	G	45	cWW
20	HL_1M5K_002	1M5K	0.1402	2	U1 small nuclear ribonucleoprotein A binding hairpin	B	RNA HAIRPIN RIBOZYME	C	35	A	36	U	37	U	38	G	39	A	41	C	42	C	44	C	45	G	46	cWW
21	HL_5DDO_004	5DDO	0.4261	2	U1 small nuclear ribonucleoprotein A binding hairpin	B	L-glutamine riboswitch (58-MER)	C	34	A	35	U	36	U	37	G	38	A	40	C	41	C	43	C	44	G	45	cWW
22	HL_6LAX_001	6LAX	0.6702	2	U1 small nuclear ribonucleoprotein A binding hairpin	A	RNA (55-MER)	C	15	A	16	U	17	U	18	G	19	A	21	C	22	C	24	C	25	G	26	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUUGCACUCCG	20
CAUUGCACCUCG	2

Non-Watson-Crick part of the motif

Sequence	Counts
AUUGCACUCC	20
AUUGCACCUC	2

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	Updated, 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: U1 small nuclear ribonucleoprotein A binding hairpin (22)
Basepair signature: cWW-F-F-F-cWW-F-F-F
Heat map statistics: Min 0.08 | Avg 0.37 | Max 0.92

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Coloring options: Nucleotide numbers

Motif HL_33074.2 Version HL_33074.2 of this group appears in releases 3.89 to 3.90 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_33074.2 Version HL_33074.2 of this group appears in releases 3.89 to 3.90

Download

Csv

Json