#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_5E6M_0025E6M0.45574C tRNAA31U32U33U38U39cWWcwW
2 HL_4QEI_0024QEI0.42724C tRNAA31U32U33U38U39cWWcwW
3 HL_5TBW_0185TBW0.373011 LSU rRNAG763U764U766U767C768cWWcwW
4 HL_8C3A_0188C3A0.320311 LSU rRNAG759U760U762U763C764cWWcwW
5 HL_5J7L_2005J7L0.20082Other HLDA LSU rRNAC2795U2796U2798A2799G2801cWWncWW
6 HL_5J7L_0185J7L0.00002AA SSU rRNAC840C841U843A845G846cWWcWW
7 HL_8VTW_0088VTW0.21502Single bulged U (H)1A LSU rRNAG271|||IC271|||JU271|||LG271|||MC271|||OcWWncWW
8 HL_6N5P_0016N5P0.43454A cyclic di-AMP riboswitchA14U15G16U21U22cWWcwW

3D structures

Complete motif including flanking bases
SequenceCounts
AUUCCCAUU2
GUCUUC1
GUGUUC1
CUUUAAG1
CCUUGAG1
GCUUGUC1
AUGUCGUUU1
Non-Watson-Crick part of the motif
SequenceCounts
UUCCCAU2
UCUU1
UGUU1
UUUAA1
CUUGA1
CUUGU1
UGUCGUU1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Other HL (1)
  • Single bulged U (H) (1)
  • Basepair signature
    cWW-cWW-F
    Heat map statistics
    Min 0.12 | Avg 0.36 | Max 0.78
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