Motif HL_34168.4 Version HL_34168.4 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5E6M_002 | 5E6M | 0.4557 | 4 | C | tRNA | A | 31 | U | 32 | U | 33 | U | 38 | U | 39 | cWW | cwW | |
| 2 | HL_4QEI_002 | 4QEI | 0.4272 | 4 | C | tRNA | A | 31 | U | 32 | U | 33 | U | 38 | U | 39 | cWW | cwW | |
| 3 | HL_5TBW_018 | 5TBW | 0.3730 | 1 | 1 | LSU rRNA | G | 763 | U | 764 | U | 766 | U | 767 | C | 768 | cWW | cwW | |
| 4 | HL_8C3A_018 | 8C3A | 0.3203 | 1 | 1 | LSU rRNA | G | 759 | U | 760 | U | 762 | U | 763 | C | 764 | cWW | cwW | |
| 5 | HL_5J7L_200 | 5J7L | 0.2008 | 2 | UNCG variation | DA | LSU rRNA | C | 2795 | U | 2796 | U | 2798 | A | 2799 | G | 2801 | cWW | ncWW |
| 6 | HL_5J7L_018 | 5J7L | 0.0000 | 2 | AA | SSU rRNA | C | 840 | C | 841 | U | 843 | A | 845 | G | 846 | cWW | cWW | |
| 7 | HL_8VTW_008 | 8VTW | 0.2150 | 2 | Single bulged U (H) | 1A | LSU rRNA | G | 271|||I | C | 271|||J | U | 271|||L | G | 271|||M | C | 271|||O | cWW | ncWW |
| 8 | HL_6N5P_001 | 6N5P | 0.4345 | 4 | A | cyclic di-AMP riboswitch | A | 14 | U | 15 | G | 16 | U | 21 | U | 22 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUCCCAUU | 2 |
| GUCUUC | 1 |
| GUGUUC | 1 |
| CUUUAAG | 1 |
| CCUUGAG | 1 |
| GCUUGUC | 1 |
| AUGUCGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCCCAU | 2 |
| UCUU | 1 |
| UGUU | 1 |
| UUUAA | 1 |
| CUUGA | 1 |
| CUUGU | 1 |
| UGUCGUU | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- UNCG variation (1)
- Single bulged U (H) (1)
- Basepair signature
- cWW-cWW-F
- Heat map statistics
- Min 0.12 | Avg 0.36 | Max 0.78
Coloring options: