Motif HL_34789.2 Version HL_34789.2 of this group appears in releases 4.1 to 4.1

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	1-6	2-4	2-5	2-6
1	HL_4WF9_071	4WF9	0.4144	0	GNRA	X	LSU rRNA	U	1762	U	1763	A	1764	A	1765	C	1766	G	1767	ncWW	ntsS
2	HL_9E6Q_033	9E6Q	0.4690	1	GNRA (H)	1	LSU rRNA	C	1491	U	1492	A	1493	A	1494	U	1495	G	1497	cWW
3	HL_4V9F_036	4V9F	0.4288	1	GNRA	0	LSU rRNA	G	1468	C	1469	A	1470	A	1471	C	1472	C	1474	cWW		tSHa
4	HL_8B0X_049	8B0X	0.3671	1		a	LSU rRNA	C	613	G	614	A	615	A	616	A	618	G	619	cWW		tSH
5	HL_4V9F_016	4V9F	0.4305	1	GNRA	0	LSU rRNA	U	493	C	494	A	495	G	496	A	498	G	499	cWW		ntSH
6	HL_9E6Q_004	9E6Q	0.4058	1		1	LSU rRNA	C	130	G	131	A	132	A	133	A	135	G	136	cWW		tSH
7	HL_4WF9_021	4WF9	0.4607	1	GNRA	X	LSU rRNA	U	686	G	687	A	688	A	689	A	691	G	692	cWW		ntSH
8	HL_8OI5_038	8OI5	0.4985	1	GNRA (H)	1	LSU rRNA	U	1858	U	1859	A	1860	A	1861	A	1863	G	1864	cWW		ntSH
9	HL_9AXU_039	9AXU	0.5233	1	GNRA (H)	2	LSU rRNA	U	1917	G	1918	A	1919	A	1920	A	1922	G	1923	cWW		tSH
10	HL_8P9A_153	8P9A	0.5392	1	GNRA	AR	LSU rRNA	U	1862	G	1863	A	1864	A	1865	A	1867	G	1868	cWW		tSH
11	HL_8GLP_046	8GLP	0.5265	1	GNRA (H)	L5	LSU rRNA	U	2810	G	2811	A	2812	A	2813	A2M	2815	G	2816	cWW		tSH
12	HL_9E6Q_041	9E6Q	0.4652	1		1	LSU rRNA	U	1773	G	1774	A	1775	G	1776	A	1778	G	1779	cWW		tSH
13	HL_9DFE_019	9DFE	0.4250	1	GNRA	1A	LSU rRNA	C	641	G	642	A	643	A	644	A	646	G	647	cWW		tSH
14	HL_6VMY_001	6VMY	0.3941	1	GNRA	A	Cobalamin riboswitch	U	223	G	224	A	225	A	226	A	228	A	229	cWW		ntSH
15	HL_1XJR_001	1XJR	0.4098	1	GNRA	A	s2m RNA	G	21	G	22	A	23	G	24	A	26	C	27	cWW		tSH
16	HL_8B0X_069	8B0X	0.3750	1	GNRA (H)	a	LSU rRNA	A	1632	G	1633	A	1634	G	1635	A	1637	U	1638	cWW		tSH
17	HL_7WKP_001	7WKP	0.3148	1	GNRA	B	3' stem loop crRNA	C	10	G	11	C	12	A	13	A	15	G	16	cWW		tSH
18	HL_2XLK_001	2XLK	0.2642	1	GNRA	C	RNA (16-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW		tSH
19	HL_4AL5_001	4AL5	0.2658	1	GNRA	B	RNA (20-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW		tSH
20	HL_3D0U_003	3D0U	0.3132	1	GNRA	A	Lysine riboswitch	G	121	G	122	A	123	A	124	A	126	C	127	cWW		tSH
21	HL_5LM7_001	5LM7	0.3029	1	GNRA	G	RNA (29-MER)	U	21	G	22	A	23	A	24	A	26	A	27	cWW		ntSH
22	HL_9E6Q_022	9E6Q	0.2817	0	GNRA (H)	1	LSU rRNA	U	759	U	760	A	761	A	762	A	763	G	764	cWW		ntSH
23	HL_5O6U_001	5O6U	0.3174	1	GNRA	A	crRNA	C	32	G	33	C	34	A	35	A	37	G	38	cWW		ntSH
24	HL_8B0X_047	8B0X	0.2363	1	GNRA (H)	a	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW		tSH
25	HL_9DFE_041	9DFE	0.5116	1	GNRA	1A	LSU rRNA	U	1720	G	1721	A	1722	G	1740	A	1741	G	1742	ncWW
26	HL_4LFB_012	4LFB	0.4520	1	GNRA	A	SSU rRNA	C	458	G	459	A	460	G	462	A	463	G	474	cWW		tSH
27	HL_8B0X_024	8B0X	0.3560	1	GNRA (H)	A	SSU rRNA	U	1165	G	1166	A	1167	A	1169	A	1170	A	1171	cWW		tSH
28	HL_9E6Q_009	9E6Q	0.4861	1	GNRA (H)	1	LSU rRNA	G	267	G	268	A	269	A	271	A	272	C	273	cWW		tSH
29	HL_4V9F_022	4V9F	0.5167	0	GNRA	0	LSU rRNA	U	733	U	734	C	735	A	736	A	737	G	738	cWW
30	HL_8DP3_003	8DP3	0.4720	0	GNRA	R	Enterovirus 5' cloverleaf cis-acting replication element	U	62	C	63	A	64	C	65	C	66	G	67	cWW
31	HL_6ASO_001	6ASO	0.3762	1	GNRA	I	U6 snRNA	U	70	G	71	C	72	U	74	A	75	A	76	ncWW		tSH
32	HL_8B0X_100	8B0X	0.3655	2	GNRA (H)	a	LSU rRNA	PSU	957	G	958	C	959	A	961	A	962	G	964	cWW		ntSH
33	HL_4KQY_002	4KQY	0.3321	0	GNRA	A	SAM-I riboswitch	C	60	G	61	A	62	A	63	A	64	G	65	ncWW		ntSH
34	HL_4LFB_022	4LFB	0.2784	0	GNRA	A	SSU rRNA	U	1012	G	1013	A	1014	A	1015	A	1016	G	1017	cWW		ntSH
35	HL_9AXU_043	9AXU	0.2590	1	GNRA (H)	2	LSU rRNA	A	2252	G	2253	A	2254	A	2255	A	2256	U	2258	ncWW		tSH
36	HL_8OI5_042	8OI5	0.2454	1	GNRA (H)	1	LSU rRNA	A	2142	G	2143	A	2144	A	2145	A	2146	U	2148	cWW		ntSH
37	HL_8P9A_158	8P9A	0.2594	1	GNRA	AR	LSU rRNA	A	2164	G	2165	A	2166	A	2167	A	2168	U	2170	cWW		ntSH
38	HL_6JDV_001	6JDV	0.2842	0	GNRA	B	CRISPR RNA direct repeat element	G	48	G	49	A	50	A	51	A	52	C	53	cWW
39	HL_6UFG_005	6UFG	0.2898	0	GNRA	A	RNA (166-MER)	C	144	G	145	A	146	A	147	A	148	G	149	cWW
40	HL_7QQX_001	7QQX	0.2298	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
41	HL_4QK9_001	4QK9	0.2242	0	GNRA variation	A	cyclic di-AMP riboswitch	C	14	U	15	G	16	A	17	A	18	G	19	cWW
42	HL_5DDO_003	5DDO	0.1712	0	GNRA with GA tSW pair	B	L-glutamine riboswitch (58-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW
43	HL_7A0S_047	7A0S	0.1518	0	GNRA	X	LSU rRNA	U	1856	G	1857	C	1858	A	1859	A	1860	G	1861	cWW
44	HL_6UFH_005	6UFH	0.1833	0	GNRA	A	RNA (167-MER)	C	145	G	146	A	147	A	148	A	149	G	150	cWW		ntSH
45	HL_8P9A_125	8P9A	0.1566	0	GNRA	AR	LSU rRNA	C	599	G	600	U	601	A	602	A	603	G	604	cWW
46	HL_5FQ5_001	5FQ5	0.1695	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
47	HL_4V9F_045	4V9F	0.1773	1	GNRA	0	LSU rRNA	C	1793	G	1794	G	1795	A	1796	A	1797	G	1799	cWW
48	HL_7KKV_003	7KKV	0.2375	1	GNRA	B	OLE* RNA	G	528	G	529	A	530	A	531	A	532	C	534	cWW
49	HL_8OI5_024	8OI5	0.1819	1	GNRA (H)	1	LSU rRNA	G	1122	G	1123	U	1124	A	1125	A	1126	C	1128	cWW
50	HL_8P9A_137	8P9A	0.1782	1	GNRA	AR	LSU rRNA	G	1126	G	1127	U	1128	A	1129	A	1130	C	1132	cWW		ntSH
51	HL_8GLP_028	8GLP	0.1608	1		L5	LSU rRNA	G	1864	G	1865	U	1866	A	1867	A	1868	C	1870	cWW		ntSH
52	HL_4V9F_028	4V9F	0.1637	1	GNRA	0	LSU rRNA	G	1054	G	1055	U	1056	A	1057	A	1058	C	1060	cWW		ntSH
53	HL_9E6Q_027	9E6Q	0.1942	1	GNRA (H)	1	LSU rRNA	G	1077	G	1078	U	1079	A	1080	A	1081	C	1083	cWW		ntSH
54	HL_9AXU_023	9AXU	0.1815	1	GNRA (H)	2	LSU rRNA	G	1157	G	1158	U	1159	A	1160	A	1161	C	1163	cWW		ntSH
55	HL_7A0S_026	7A0S	0.2060	2	GNRA	X	LSU rRNA	A	966	G	967	C	968	A	970	A	971	U	973	cWW		ntSH
56	HL_4WF9_027	4WF9	0.2476	2	GNRA	X	LSU rRNA	U	999	G	1000	A	1001	A	1003	A	1004	G	1006	cWW		ntSH
57	HL_9DFE_025	9DFE	0.2159	2	GNRA	1A	LSU rRNA	C	955	G	956	A	957	A	959	A	960	G	962	cWW		ntSH
58	HL_5FQ5_003	5FQ5	0.2123	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	ncWW		ntSH
59	HL_7QR0_003	7QR0	0.1899	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
60	HL_8XPP_001	8XPP	0.1805	0	GNRA	B	RNA (35-MER)	U	588	G	589	A	590	A	591	A	592	G	593	cWW		ntSH
61	HL_6AZ4_001	6AZ4	0.2136	0	GNRA	A	RNA (32-MER)	U	20	G	21	A	22	A	23	A	24	G	25	cWW		ntSH
62	HL_3RG5_007	3RG5	0.1857	0	GNRA	B	Selenocysteine transfer RNA	U	47\|\|\|C	U	47\|\|\|D	A	47\|\|\|E	G	47\|\|\|F	C	47\|\|\|G	G	47\|\|\|H	cWW		ntSHa
63	HL_8B0X_006	8B0X	0.1816	0	GNRA (H)	A	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW		ntSH
64	HL_4LFB_007	4LFB	0.2077	0	GNRA	A	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW		ntSH
65	HL_5M0H_001	5M0H	0.1571	0	GNRA	A	ASH1 E3 (42 nt-TL/TLR)	U	21	G	22	A	23	A	24	A	25	G	26	cWW		ntSH
66	HL_6WPI_001	6WPI	0.1725	0	GNRA	B	RNA (47-MER)	U	25	G	26	A	27	A	28	A	29	G	30	cWW		ntSH
67	HL_4PCJ_001	4PCJ	0.1666	0	GNRA	A	trCUG-3('5)	U	16	G	17	A	18	A	19	A	20	G	21	cWW		ntSH
68	HL_5BTM_001	5BTM	0.1554	0	GNRA	A	RNA (55-mer)	U	26	G	27	A	28	A	29	A	30	G	31	cWW		ntSH
69	HL_4K27_001	4K27	0.1437	0	GNRA	U	Myotonic Dystrophy Type 2 RNA	U	26	G	27	A	28	A	29	A	30	G	31	cWW		ntSH
70	HL_5VCI_001	5VCI	0.1415	0	GNRA	A	RNA (22-mer)	C	16	G	17	A	18	A	19	A	20	G	21	cWW		ntSH
71	HL_4JF2_001	4JF2	0.1449	0	GNRA	A	PreQ1-II Riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW		ntSH
72	HL_5D5L_001	5D5L	0.1505	0	GNRA	A	PreQ1-II riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW		ntSH
73	HL_5UZ6_001	5UZ6	0.1132	0	GNRA	A	RNA (25-MER)	C	15	G	16	A	17	A	18	A	19	G	20	cWW		ntSH
74	HL_8HZE_002	8HZE	0.1094	0	GNRA	B	RNA (36-MER)	C	19	G	20	A	21	A	22	A	23	G	24	cWW		ntSH
75	HL_2R8S_001	2R8S	0.1461	0	GNRA	R	P4-P6 RNA RIBOZYME DOMAIN	G	149	G	150	A	151	A	152	A	153	C	154	cWW		ntSH
76	HL_4PLX_001	4PLX	0.1393	0	GNRA	A	Core ENE hairpin and A-rich tract from MALAT1	C	24	G	25	A	26	A	27	A	28	G	29	cWW		ntSH
77	HL_7WIE_001	7WIE	0.1535	0	GNRA	V	THF-II riboswitch (folE RNA)	C	31	G	32	A	33	A	34	A	35	G	37	cWW		ntSH
78	HL_1KH6_002	1KH6	0.1687	0	GNRA	A	JIIIabc	C	28	G	29	A	30	A	31	A	32	G	33	cWW		ntSH
79	HL_1U6B_001	1U6B	0.1706	0	GNRA	B	197-MER	G	23	G	24	A	25	A	26	A	27	C	28	cWW		ntSH
80	HL_4LFB_027	4LFB	0.1595	0	GNRA	A	SSU rRNA	C	1165	G	1166	A	1167	A	1168	A	1169	G	1171	cWW		ntSH
81	HL_3V7E_006	3V7E	0.1387	0	GNRA (H)	D	SAM-I riboswitch	G	305	G	306	A	307	A	308	A	309	C	310	cWW		ntSH
82	HL_4FRG_002	4FRG	0.1436	0	GNRA	B	Cobalamin riboswitch	C	46	G	47	A	48	A	49	A	50	G	51	cWW		ntSH
83	HL_6JQ5_004	6JQ5	0.1452	0	GNRA	B	Hatchet ribozyme	C	45	G	46	A	47	A	48	A	49	G	50	cWW		ntSH
84	HL_4BW0_001	4BW0	0.1876	0	GNRA	A	HMKT-7	C	9	G	10	A	11	A	12	A	13	G	14	cWW		ntSH
85	HL_9FN3_004	9FN3	0.1997	0	GNRA	B	SAMURI-ProSeDMA	C	42	G	43	A	44	A	45	A	46	G	47	cWW		ntSH
86	HL_9FN2_004	9FN2	0.1850	0	GNRA	B	SAMURI-SAM	C	42	G	43	A	44	A	45	A	46	G	47	cWW		ntSH
87	HL_9E9Q_003	9E9Q	0.1854	0		A	Sarbecovirus 5'UTR	C	83	G	84	A	85	A	86	A	87	G	88	cWW		ntSH
88	HL_5XTM_002	5XTM	0.1758	0	GNRA	D	RNA (47-MER)	G	24	G	25	A	26	A	27	A	28	C	29	cWW		ntSH
89	HL_5XTM_001	5XTM	0.1524	0	GNRA	B	RNA (47-MER)	G	24	G	25	A	26	A	27	A	28	C	29	cWW		ntSH
90	HL_7UZ0_002	7UZ0	0.1306	0	GNRA	A	tRNA	C	36	G	37	A	38	A	39	A	40	G	41	cWW		ntSH
91	HL_5Y7M_002	5Y7M	0.1361	0	GNRA	D	RNA (52-MER)	C	24	G	25	A	26	A	27	A	28	G	29	cWW		ntSH
92	HL_5DCV_002	5DCV	0.1488	0	GNRA	D	RNA (47-MER)	G	26	G	27	A	28	A	29	A	30	C	31	cWW		ntSH
93	HL_3CUL_001	3CUL	0.1874	0	GNRA	C	RNA (92-MER)	C	7	G	8	A	9	A	10	A	11	G	12	cWW		ntSH
94	HL_1NBS_007	1NBS	0.1795	0	GNRA	B	RNase P class B	A	204	G	205	A	206	A	207	A	208	U	209	cWW		ntSH
95	HL_8SYK_004	8SYK	0.1577	0	GNRA	A	RNA device 43 truncation mutant 3 (U100C)	C	79	G	80	A	81	A	82	A	83	G	84	cWW		ntSH
96	HL_7QQP_003	7QQP	0.1733	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
97	HL_8Z8U_002	8Z8U	0.2107	0	GNRA	B	RNA (41-MER)	C	19	G	20	A	21	A	22	A	23	G	24	cWW		ntSH
98	HL_3P22_001	3P22	0.2289	0	GNRA	A	Core ENE hairpin from KSHV PAN RNA	C	17	G	18	A	19	A	20	A	21	G	22	cWW		ntSH
99	HL_7QQX_003	7QQX	0.1915	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
100	HL_5DDO_001	5DDO	0.1760	0	GNRA	A	L-glutamine riboswitch (58-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW
101	HL_9DFE_015	9DFE	0.1906	0	GNRA	1A	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW		ntSH
102	HL_7A0S_016	7A0S	0.2171	0	GNRA	X	LSU rRNA	C	498	G	499	G	500	G	501	A	502	G	503	cWW		ntSH
103	HL_4WF9_016	4WF9	0.2110	0	GNRA	X	LSU rRNA	C	533	G	534	G	535	A	536	A	537	G	538	cWW		ntSH
104	HL_4W90_003	4W90	0.1814	0	GNRA	C	cyclic di-AMP riboswitch	C	82	G	83	A	84	A	85	A	86	G	87	cWW		ntSH
105	HL_5F9R_003	5F9R	0.2185	0	GNRA	A	tracrRNA	U	90	G	91	A	92	A	93	A	94	A	95	cWW		ntSH
106	HL_4AOB_002	4AOB	0.1481	0	GNRA	A	SAM-I riboswitch	A	49	A	50	A	51	A	52	A	53	U	54	cWW		tSH
107	HL_8KAJ_002	8KAJ	0.1571	0	GNRA	I	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW
108	HL_3D0U_004	3D0U	0.1849	0	GNRA	A	Lysine riboswitch	C	142	G	143	A	144	A	145	A	146	G	147	cWW		ntSH
109	HL_4Y1M_004	4Y1M	0.1574	0	GNRA	B	E. coli yybP-ykoY riboswitch	A	81	G	82	A	83	A	84	A	85	U	86	cWW		ntSH
110	HL_8B0X_020	8B0X	0.1607	0	GNRA (H)	A	SSU rRNA	A	1012	G	1013	A	1014	G	1015	A	1016	U	1017	cWW		ntSH
111	HL_8P9A_159	8P9A	0.1455	0	GNRA	AR	LSU rRNA	A	2220	G	2221	A	2222	A	2223	A	2224	U	2225	cWW
112	HL_9AXU_044	9AXU	0.1227	0	GNRA (H)	2	LSU rRNA	A	2308	G	2309	A	2310	A	2311	A	2312	U	2313	cWW
113	HL_8OI5_043	8OI5	0.1007	0	GNRA (H)	1	LSU rRNA	A	2198	G	2199	A	2200	A	2201	A	2202	U	2203	cWW
114	HL_3SUX_002	3SUX	0.1334	0	GNRA	X	THF riboswitch	C	65	G	66	A	67	A	68	A	69	G	70	cWW
115	HL_8CRE_214	8CRE	0.1392	0	GNRA	CM	SSU rRNA	A	1069	G	1070	A	1071	A	1072	A	1073	U	1074	cWW
116	HL_8GLP_106	8GLP	0.1571	0	GNRA (H)	S2	SSU rRNA	G	1141	G	1142	A	1143	A	1144	A	1145	C	1146	cWW
117	HL_8P9A_213	8P9A	0.1214	0	GNRA	sR	SSU rRNA	A	1084	G	1085	A	1086	A	1087	A	1088	U	1089	cWW
118	HL_3NVI_001	3NVI	0.1324	0		E	RNA (24-mer)	C	9	G	10	A	11	A	12	A	13	G	14	cWW		ntSH
119	HL_5VW1_001	5VW1	0.1008	0	GNRA	C	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
120	HL_8OI5_011	8OI5	0.1010	0	GNRA (H)	1	LSU rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW
121	HL_8B0X_017	8B0X	0.1762	0	GNRA (H)	A	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW		ntSH
122	HL_4LFB_019	4LFB	0.1836	0	GNRA	A	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW		ntSH
123	HL_4LCK_004	4LCK	0.1433	0	GNRA	B	tRNA	C	71	G	72	A	73	A	74	A	75	G	76	cWW		ntSH
124	HL_2OIU_001	2OIU	0.1393	0	GNRA	P	L1 Ribozyme RNA Ligase	C	10	G	11	A	12	A	13	A	14	G	15	cWW		ntSH
125	HL_9DID_001	9DID	0.1381	0	GNRA	A	frameshifting pseudoknot RNA	C	61	G	62	A	63	A	64	A	65	G	66	cWW		ntSH
126	HL_9E6Q_005	9E6Q	0.1120	0		1	LSU rRNA	C	149	G	150	U	151	A	152	A	153	G	154	cWW		ntSH
127	HL_8HZL_002	8HZL	0.1502	0	GNRA	B	RNA (84-MER)	C	49	G	50	A	51	A	52	A	53	G	54	cWW		ntSH
128	HL_6MJ0_003	6MJ0	0.1662	0	GNRA with GA tSW pair (H)	A	tRNA-like 3' UTR element	C	49	G	50	A	51	A	52	A	53	G	54	cWW		ntSH
129	HL_3NMU_002	3NMU	0.1470	0	GNRA	E	RNA (34-MER)	C	18	G	19	A	20	A	21	A	22	G	23	cWW		ntSH
130	HL_3AM1_003	3AM1	0.1697	0	GNRA	B	ASL-truncated tRNA	C	45	G	46	A	47	G	48	A	49	G	50	cWW		ntSH
131	HL_4V9F_072	4V9F	0.1736	0	GNRA	9	5S rRNA	C	89	G	90	C	91	G	92	A	93	G	94	cWW		ntSH
132	HL_8P9A_129	8P9A	0.1700	0	GNRA	AR	LSU rRNA	C	732	G	733	C	734	A	735	A	736	G	737	cWW		ntSH
133	HL_8P9A_185	8P9A	0.1449	0	GNRA	AS	5S rRNA	G	88	G	89	U	90	G	91	A	92	C	93	cWW		ntSH
134	HL_8OI5_070	8OI5	0.1565	0	GNRA	3	5S rRNA	G	88	G	89	A	90	G	91	A	92	C	93	cWW		ntSH
135	HL_9AXU_070	9AXU	0.1300	0	GNRA (H)	3	5S rRNA	G	86	G	87	A	88	G	89	A	90	C	91	cWW		ntSH
136	HL_8QYX_073	8QYX	0.1342	0	GNRA (H)	B2	5S rRNA	G	86	G	87	A	88	G	89	A	90	C	91	cWW		ntSH
137	HL_7U4A_003	7U4A	0.1600	0	GNRA	A	RNA (70-MER)	C	62	G	63	A	64	A	65	A	66	G	67	cWW		ntSH
138	HL_3E5C_001	3E5C	0.1641	0	GNRA	A	SAM-III riboswitch aptamer (SMK box)	G	18	G	19	A	20	A	21	A	22	C	23	cWW		tSH
139	HL_4V9F_070	4V9F	0.1826	0	GNRA	0	LSU rRNA	G	2876	G	2877	U	2878	A	2879	A	2880	C	2881	cWW		ntSH
140	HL_6CB3_004	6CB3	0.1807	0	GNRA	B	RNA (99-MER)	G	20	G	21	A	22	A	23	A	24	C	25	cWW		ntSH
141	HL_7A0S_063	7A0S	0.1712	0	GNRA	X	LSU rRNA	C	2637	G	2638	A	2639	G	2640	A	2641	G	2642	cWW		tSH
142	HL_7R97_001	7R97	0.1675	0	GNRA	C	RNA (28-MER)	C	11	G	12	C	13	A	14	A	15	G	16	cWW		tSH
143	HL_4V9F_066	4V9F	0.1593	0	GNRA	0	LSU rRNA	C	2695	G	2696	A	2697	G	2698	A	2699	G	2700	cWW		ntSH
144	HL_8OI5_061	8OI5	0.1451	0	GNRA (H)	1	LSU rRNA	C	2997	G	2998	A	2999	G	3000	A	3001	G	3002	cWW		ntSH
145	HL_8GLP_070	8GLP	0.1476	0	GNRA (H)	L5	LSU rRNA	C	4603	G	4604	A	4605	G	4606	A	4607	G	4608	cWW		ntSH
146	HL_8B0X_091	8B0X	0.1639	0		a	LSU rRNA	C	2662	G	2663	A	2664	G	2665	A	2666	G	2667	cWW		ntSH
147	HL_8P9A_176	8P9A	0.1861	0	GNRA	AR	LSU rRNA	C	3025	G	3026	A	3027	G	3028	A	3029	G	3030	cWW		ntSH
148	HL_5B2P_001	5B2P	0.1731	0	GNRA	B	Guide RNA	C	35	G	36	A	37	A	38	A	39	G	40	cWW		tSH
149	HL_5X2G_001	5X2G	0.1395	0	GNRA	B	sgRNA	U	32	G	33	A	34	A	35	A	36	A	37	cWW		ntSH
150	HL_3MOJ_001	3MOJ	0.1440	0	GNRA	A	LSU rRNA	G	2529	G	2530	A	2531	A	2532	A	2533	C	2534	cWW		ntSH
151	HL_4XCO_004	4XCO	0.1800	0		M	SRP RNA	C	208	G	209	G	210	A	211	A	212	G	213	cWW		ntSH
152	HL_5B2T_003	5B2T	0.1542	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
153	HL_9E6Q_062	9E6Q	0.1549	0	GNRA (H)	1	LSU rRNA	C	2773	G	2774	A	2775	G	2776	A	2777	G	2778	cWW		ntSH
154	HL_8Z8U_001	8Z8U	0.1365	0	GNRA	A	RNA (41-MER)	C	19	G	20	A	21	A	22	A	23	G	24	cWW		ntSH
155	HL_8D28_002	8D28	0.1407	0	GNRA	B	RNA (33-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntSH
156	HL_3RW6_001	3RW6	0.1459	0	GNRA	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	G	27	G	28	A	29	A	30	A	31	C	32	cWW		tSH
157	HL_4RUM_002	4RUM	0.1391	0	GNRA	A	NiCo riboswitch	C	51	G	52	A	53	A	54	A	55	G	56	cWW		ntSH
158	HL_1MZP_001	1MZP	0.1506	0	GNRA	B	fragment of 23S rRNA	C	25	G	26	C	27	A	28	A	29	G	30	cWW		ntSH
159	HL_9E6Q_056	9E6Q	0.1088	0	GNRA (H)	1	LSU rRNA	G	2489	G	2490	A	2491	A	2492	A	2493	C	2494	cWW		ntSH
160	HL_4V9F_020	4V9F	0.1071	0	GNRA	0	LSU rRNA	G	690	G	691	A	692	A	693	A	694	C	695	cWW		ntSH
161	HL_9DFE_044	9DFE	0.1418	0	GNRA	1A	LSU rRNA	C	1806	G	1807	U	1808	A	1809	A	1810	G	1811	cWW		ntSH
162	HL_4V9F_009	4V9F	0.1380	0	GNRA	0	LSU rRNA	C	252	U	253	C	254	A	255	C	256	G	257	cWW		ntSH
163	HL_8B0X_003	8B0X	0.1595	0	GNRA (H)	A	SSU rRNA	C	186	G	187	C	188	A	189	A	190	G	191	cWW		ntSH
164	HL_8P9A_131	8P9A	0.1595	0	GNRA	AR	LSU rRNA	G	844	G	845	A	846	A	847	A	848	C	849	cWW		ntSH
165	HL_3PDR_001	3PDR	0.1883	0	GNRA	X	M-box riboswitch (ykoK leader)	C	68	C	69	A	70	A	71	A	72	G	73	cWW		ntSH
166	HL_9E6Q_050	9E6Q	0.1722	0	GNRA (H)	1	LSU rRNA	C	2324	G	2325	C	2326	A	2327	A	2328	G	2329	cWW		ntSH
167	HL_9E6Q_021	9E6Q	0.1667	0		1	LSU rRNA	G	736	G	737	C	738	A	739	A	740	C	741	cWW		ntSH
168	HL_4Y1M_003	4Y1M	0.1319	0	GNRA	B	E. coli yybP-ykoY riboswitch	U	55	G	56	A	57	A	58	A	59	A	60	cWW		ntSH
169	HL_4K50_001	4K50	0.1221	0	GNRA	B	RNA (33-MER)	U	587	G	588	A	589	A	590	A	591	G	592	cWW		ntSH
170	HL_4R4V_004	4R4V	0.1370	0	GNRA	A	VS ribozyme RNA	C	735	G	736	U	737	A	738	A	739	G	740	cWW		ntSH
171	HL_9AXU_011	9AXU	0.1126	0	GNRA (H)	2	LSU rRNA	U	390	G	391	A	392	A	393	A	394	A	395	cWW		ntSH
172	HL_4V9F_054	4V9F	0.1354	0	GNRA	0	LSU rRNA	C	2248	G	2249	G	2250	G	2251	A	2252	G	2253	cWW		ntSH
173	HL_1RLG_002	1RLG	0.1455	0	GNRA	D	25-MER	C	9	G	10	A	11	A	12	A	13	G	14	cWW		ntSH
174	HL_8P9A_123	8P9A	0.1175	0	GNRA	AR	LSU rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW		ntSH
175	HL_9L6X_002	9L6X	0.1383	0	GNRA	D	CS1 RNA	C	16	G	17	A	18	A	19	A	20	G	21	cWW		ntSH
176	HL_6TFF_001	6TFF	0.1344	0	GNRA	A	nadA RNA	C	27	G	28	A	29	A	30	A	31	G	32	cWW		ntSH
177	HL_8ITS_002	8ITS	0.1196	0	GNRA	A	RNA (46-MER)	C	31	G	32	A	33	A	34	A	35	G	36	cWW		ntSH
178	HL_8JOZ_003	8JOZ	0.1223	0	GNRA	B	tRNA	C	47\|\|\|B	G	47\|\|\|C	A	47\|\|\|D	A	47\|\|\|E	A	47\|\|\|F	G	47\|\|\|G	cWW		ntSH
179	HL_9JA9_001	9JA9	0.1307	0		A	Theophylline aptamer	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntSH
180	HL_7OZQ_004	7OZQ	0.1130	0	GNRA	H	RNA	C	14	G	15	A	16	A	17	A	18	G	19	cWW		ntSH
181	HL_7D7W_001	7D7W	0.1088	0	GNRA	A	nadA RNA	C	27	G	28	A	29	A	30	A	31	G	32	cWW		ntSH
182	HL_4OQU_003	4OQU	0.1232	0	GNRA	A	SAM-I-IV-variant	G	57	G	58	A	59	G	60	A	61	C	62	cWW		ntSH
183	HL_9DFE_062	9DFE	0.1491	0	GNRA	1A	LSU rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		tSH
184	HL_5FJC_002	5FJC	0.1287	0	GNRA	A	SAM-I riboswitch	A	49	G	50	A	51	A	52	A	53	U	54	cWW		ntSH
185	HL_9DXL_001	9DXL	0.1175	0	GNRA	A	RhoBAST aptamer	G	7	G	8	A	9	A	10	A	11	C	12	cWW		ntSH
186	HL_8B0X_002	8B0X	0.1447	0	GNRA (H)	A	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW		ntSH
187	HL_8ITS_001	8ITS	0.1437	0	GNRA	A	RNA (46-MER)	C	15	G	16	A	17	A	18	A	19	G	20	cWW		ntSH
188	HL_9DID_002	9DID	0.1403	0	GNRA	B	frameshifting pseudoknot RNA	C	61	G	62	A	63	A	64	A	65	G	66	cWW		ntSH
189	HL_8X5V_001	8X5V	0.1272	0	GNRA	B	RNA (110-mer)	U	33	G	34	A	35	A	36	A	37	A	38	cWW		ntSH
190	HL_5DDP_001	5DDP	0.1282	0	GNRA	A	glnA	G	11	G	12	A	13	A	14	A	15	C	16	cWW		ntSH
191	HL_1U9S_002	1U9S	0.1434	0	GNRA	A	RNase P class A	G	99	G	100	U	101	A	102	A	103	C	104	cWW		ntSH
192	HL_3IWN_001	3IWN	0.1274	0	GNRA	A	Cyclic di-GMP-I riboswitch	C	21	G	22	A	23	A	24	A	25	G	26	cWW		ntSH
193	HL_5FJC_003	5FJC	0.1183	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW		ntSH
194	HL_5TPY_006	5TPY	0.1163	0	GNRA	A	RNA (71-MER)	C	62	G	63	A	64	A	65	A	66	G	67	cWW		ntSH
195	HL_3MXH_001	3MXH	0.0941	0	GNRA	R	Cyclic di-GMP-I riboswitch	C	31	G	32	A	33	A	34	A	35	G	36	cWW		ntSH
196	HL_4AOB_003	4AOB	0.1208	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW		ntSH
197	HL_6DVK_001	6DVK	0.1073	0	GNRA	H	RNA (95-MER)	G	45	G	46	A	47	A	48	A	49	C	50	cWW		ntSH
198	HL_3IGI_006	3IGI	0.1085	0	GNRA	A	Group II catalytic intron D1-D4-3	G	274	G	275	A	276	A	277	A	278	C	279	cWW		ntSH
199	HL_7K16_001	7K16	0.1148	0	GNRA	P	RNA (51-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntSH
200	HL_4ENC_002	4ENC	0.1503	0	GNRA	A	Fluoride riboswitch	U	28	G	29	A	30	A	31	A	32	A	33	cWW		ntSH
201	HL_7UQ6_002	7UQ6	0.1314	0	GNRA	B	tRNA	G	41	G	42	A	43	A	44	A	45	C	46	cWW		ntSH
202	HL_6UFH_002	6UFH	0.1073	0	GNRA	A	RNA (167-MER)	G	45	G	46	A	47	A	48	A	49	C	50	cWW		ntSH
203	HL_6JOO_001	6JOO	0.1062	0	GNRA	B	Guide RNA	G	32	G	33	A	34	A	35	A	36	C	37	cWW		ntSH
204	HL_7QQP_001	7QQP	0.1597	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		ntSH
205	HL_7QR0_001	7QR0	0.1500	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		ntSH
206	HL_9DFE_056	9DFE	0.1487	0	GNRA	1A	LSU rRNA	C	2374	G	2375	A	2376	A	2377	A	2378	G	2379	cWW		ntSH
207	HL_4NLF_001	4NLF	0.1740	0	GNRA	A	23S ribosomal RNA Sarcin Ricin Loop	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		ntSH
208	HL_5M0I_002	5M0I	0.1679	0	GNRA	F	ASH1-E3 element, RNA (28-MER)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		ntSH
209	HL_5M0I_001	5M0I	0.1901	0	GNRA	E	ASH1-E3 element, RNA (28-MER)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		ntSH
210	HL_5M0J_002	5M0J	0.1968	0	GNRA	F	ASH1 E3 (28 nt-loop)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		ntSH
211	HL_5M0J_001	5M0J	0.2362	0	GNRA	E	ASH1 E3 (28 nt-loop)	C	12	G	13	A	14	A	15	A	16	G	17	cWW		ntSH
212	HL_3LQX_001	3LQX	0.1725	0	GNRA	B	SRP RNA	C	153	G	154	A	155	A	156	A	157	G	158	cWW		tSH
213	HL_6N2V_002	6N2V	0.1413	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	56	G	57	A	58	A	59	A	60	G	61	cWW		ntSH
214	HL_4Y1M_002	4Y1M	0.1416	0	GNRA	B	E. coli yybP-ykoY riboswitch	C	24	G	25	A	26	A	27	A	28	G	29	cWW		ntSH
215	HL_6N2V_003	6N2V	0.1598	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	76	G	77	A	78	A	79	A	80	G	81	cWW		ntSH
216	HL_8P9A_214	8P9A	0.1815	0	GNRA	sR	SSU rRNA	C	1121	G	1122	C	1123	A	1124	A	1125	G	1126	cWW		ntSH
217	HL_4LFB_020	4LFB	0.1972	0	GNRA	A	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW		ntSH
218	HL_8B0X_018	8B0X	0.1858	0	GNRA (H)	A	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW		ntSH
219	HL_8CRE_215	8CRE	0.1743	0	GNRA	CM	SSU rRNA	C	1106	G	1107	C	1108	A	1109	A	1110	G	1111	cWW		ntSH
220	HL_8GLP_107	8GLP	0.1527	0		S2	SSU rRNA	U	1178	G	1179	C	1180	A	1181	A	1182	A	1183	cWW		ntSH
221	HL_1Q96_001	1Q96	0.1629	0	GNRA	A	sarcin/ricin 28S rRNA	U	13	G	14	A	15	G	16	A	17	A	18	cWW		ntSH
222	HL_4V9F_023	4V9F	0.1536	0	GNRA	0	LSU rRNA	C	804	G	805	A	806	A	807	A	808	G	809	cWW		ntSH
223	HL_8GLP_022	8GLP	0.1793	0	GNRA (H)	L5	LSU rRNA	G	1561	G	1562	A	1563	A	1564	A	1565	C	1566	cWW		ntSH
224	HL_7ENI_001	7ENI	0.1816	0	GNRA	B	sgRNA (74-MER)	G	34	G	35	A	36	A	37	A	38	C	39	cWW		ntSH
225	HL_8OI5_018	8OI5	0.1809	0	GNRA (H)	1	LSU rRNA	G	840	G	841	A	842	A	843	A	844	C	845	cWW		ntSH
226	HL_4V9F_048	4V9F	0.2201	0	GNRA	0	LSU rRNA	C	1862	G	1863	C	1864	A	1865	A	1866	G	1867	cWW		ntSH
227	HL_9E6Q_046	9E6Q	0.2066	0	GNRA (H)	1	LSU rRNA	C	1942	G	1943	U	1944	A	1945	A	1946	OMG	1947	cWW		ntSH
228	HL_4LFB_003	4LFB	0.2511	0	GNRA	A	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW		ntSH
229	HL_4V9F_040	4V9F	0.2340	0	GNRA	0	LSU rRNA	G	1628	G	1629	A	1630	A	1631	A	1632	C	1633	cWW		ntSH
230	HL_6GYV_004	6GYV	0.1945	0		A	Lariat-capping ribozyme	C	125	U	126	A	127	A	128	C	129	G	130	cWW		ntSH
231	HL_1MFQ_002	1MFQ	0.2063	0	GNRA	A	SRP RNA	G	197	G	198	A	199	A	200	A	201	C	202	cWW		tSH
232	HL_6JDV_002	6JDV	0.2156	0	GNRA	B	CRISPR RNA direct repeat element	U	86	G	87	A	88	A	89	A	90	A	91	cWW		tSH
233	HL_4WF9_060	4WF9	0.1655	0	GNRA	X	LSU rRNA	C	2685	G	2686	A	2687	G	2688	A	2689	G	2690	cWW		ntSH
234	HL_6UFH_004	6UFH	0.2139	0	GNRA	A	RNA (167-MER)	C	106	G	107	A	108	A	109	A	110	G	111	cWW
235	HL_9E6Q_061	9E6Q	0.2006	0	GNRA (H)	1	LSU rRNA	C	2708	G	2709	C	2710	G	2711	A	2712	G	2713	cWW
236	HL_5U3G_002	5U3G	0.2167	0	GNRA	B	Guanidine-I riboswitch	C	47	G	48	A	49	A	50	A	51	G	52	cWW		ntSH
237	HL_7A0S_062	7A0S	0.2201	0	GNRA	X	LSU rRNA	C	2573	G	2574	U	2575	G	2576	A	2577	G	2578	cWW
238	HL_9DFE_061	9DFE	0.2239	0	GNRA	1A	LSU rRNA	C	2594	G	2595	U	2596	G	2597	A	2598	G	2599	cWW		ntSH
239	HL_4WF9_059	4WF9	0.2536	0	GNRA	X	LSU rRNA	C	2621	G	2622	U	2623	G	2624	A	2625	G	2626	cWW
240	HL_9E6Q_017	9E6Q	0.2581	0	GNRA (H)	1	LSU rRNA	G	601	G	602	U	603	G	604	A	605	C	606	cWW
241	HL_9E6Q_030	9E6Q	0.2655	0	GNRA (H)	1	LSU rRNA	C	1349	G	1350	U	1351	G	1352	A	1353	G	1354	cWW
242	HL_8B0X_021	8B0X	0.2513	0	GNRA (H)	A	SSU rRNA	U	1076	G	1077	U	1078	G	1079	A	1080	A	1081	cWW
243	HL_4LFB_024	4LFB	0.2416	0	GNRA	A	SSU rRNA	C	1076	G	1077	U	1078	G	1079	A	1080	G	1081	cWW
244	HL_8P9A_142	8P9A	0.2683	0	GNRA	AR	LSU rRNA	C	1403	G	1404	U	1405	A	1406	A	1407	G	1408	cWW
245	HL_2Z75_004	2Z75	0.2340	0	GNRA	B	glmS ribozyme	G	113	G	114	C	115	G	116	A	117	C	118	cWW
246	HL_9E6Q_035	9E6Q	0.2411	0		1	LSU rRNA	G	1554	G	1555	C	1556	A	1557	A	1558	C	1559	cWW
247	HL_8GLP_032	8GLP	0.2356	0	GNRA (H)	L5	LSU rRNA	C	2317	G	2318	C	2319	G	2320	G	2321	G	2322	cWW
248	HL_9AXU_027	9AXU	0.2489	0	GNRA (H)	2	LSU rRNA	C	1437	G	1438	U	1439	G	1440	A	1441	G	1442	cWW
249	HL_8OI5_026	8OI5	0.2854	0	GNRA (H)	1	LSU rRNA	U	1399	G	1400	U	1401	A	1402	A	1403	A	1404	cWW
250	HL_9AXU_033	9AXU	0.2871	0	GNRA (H)	2	LSU rRNA	G	1669	G	1670	C	1671	A	1672	A	1673	C	1674	cWW
251	HL_8GLP_040	8GLP	0.2939	0	GNRA (H)	L5	LSU rRNA	G	2578	G	2579	U	2580	A	2581	A	2582	C	2583	cWW
252	HL_8OI5_032	8OI5	0.3028	0	GNRA (H)	1	LSU rRNA	G	1630	G	1631	C	1632	A	1633	A	1634	C	1635	cWW
253	HL_8P9A_147	8P9A	0.2983	0	GNRA	AR	LSU rRNA	G	1634	G	1635	U	1636	A	1637	A	1638	C	1639	cWW
254	HL_2BTE_007	2BTE	0.2423	0	GNRA (H)	E	tRNA	C	46	G	47	C	47\|\|\|A	A	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	cWW
255	HL_3W3S_003	3W3S	0.2395	0	GNRA	B	Selenocysteine transfer RNA	C	47\|\|\|F	G	47\|\|\|G	C	47\|\|\|H	A	47\|\|\|I	A	47\|\|\|J	G	47\|\|\|K	cWW
256	HL_9DFE_030	9DFE	0.2147	0	GNRA	1A	LSU rRNA	C	1222	G	1223	C	1224	G	1225	A	1226	G	1227	cWW
257	HL_9AXU_060	9AXU	0.1967	0	GNRA (H)	2	LSU rRNA	C	3058	G	3059	U	3060	G	3061	A	3062	G	3063	cWW
258	HL_8OI5_060	8OI5	0.1851	0	GNRA (H)	1	LSU rRNA	C	2935	G	2936	U	2937	G	2938	A	2939	G	2940	cWW
259	HL_8GLP_069	8GLP	0.1839	0	GNRA (H)	L5	LSU rRNA	C	4540	G	4541	U	4542	G	4543	A	4544	G	4545	cWW
260	HL_8P9A_175	8P9A	0.1844	0	GNRA	AR	LSU rRNA	C	2963	G	2964	U	2965	G	2966	A	2967	G	2968	cWW
261	HL_8B0X_046	8B0X	0.1697	0	GNRA (H)	a	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW
262	HL_7A0S_015	7A0S	0.2034	0	GNRA	X	LSU rRNA	C	473	G	474	U	475	G	476	A	477	G	478	cWW
263	HL_4WF9_015	4WF9	0.1850	0	GNRA	X	LSU rRNA	C	508	G	509	U	510	G	511	A	512	G	513	cWW
264	HL_8B0X_025	8B0X	0.2035	0	GNRA (H)	A	SSU rRNA	C	1265	G	1266	C	1267	G	1268	A	1269	G	1270	cWW
265	HL_4YAZ_003	4YAZ	0.2158	0	GNRA	R	Cyclic di-GMP-I riboswitch	C	25	G	26	C	27	G	28	A	29	G	30	cWW
266	HL_4V9F_017	4V9F	0.2202	0	GNRA	0	LSU rRNA	C	576	G	577	C	578	G	579	A	580	G	581	cWW
267	HL_4WFL_003	4WFL	0.1842	0	GNRA	A	LSRP RNA	G	81	G	82	U	83	A	84	A	85	C	86	cWW
268	HL_9E6Q_015	9E6Q	0.2319	0	GNRA (H)	1	LSU rRNA	OMC	493	G	494	U	495	G	496	A	497	G	498	cWW
269	HL_8GLP_010	8GLP	0.1976	0	GNRA (H)	L5	LSU rRNA	C	368	G	369	U	370	A	371	A	372	G	373	cWW
270	HL_4V9F_015	4V9F	0.1950	0	GNRA	0	LSU rRNA	U	468	G	469	U	470	G	471	A	472	A	473	cWW
271	HL_8OI5_010	8OI5	0.1915	0	GNRA (H)	1	LSU rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
272	HL_8P9A_122	8P9A	0.1892	0	GNRA	AR	LSU rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
273	HL_9AXU_010	9AXU	0.1945	0	GNRA (H)	2	LSU rRNA	A	365	G	366	U	367	G	368	A	369	U	370	cWW
274	HL_8GLP_110	8GLP	0.2136	0	GNRA (H)	S2	SSU rRNA	A	1353	G	1354	C	1355	G	1356	A	1357	U	1358	cWW
275	HL_8P9A_217	8P9A	0.2331	0	GNRA	sR	SSU rRNA	A	1296	G	1297	U	1298	G	1299	A	1300	U	1301	cWW
276	HL_8CRE_218	8CRE	0.1949	0	GNRA	CM	SSU rRNA	A	1281	G	1282	U	1283	G	1284	A	1285	U	1286	cWW
277	HL_3IGI_003	3IGI	0.2065	0	GNRA	A	Group II catalytic intron D1-D4-3	G	89	G	90	C	91	G	92	A	93	C	94	cWW
278	HL_9DFE_066	9DFE	0.1793	0	GNRA	1A	LSU rRNA	C	2856	G	2857	C	2858	G	2859	A	2860	G	2861	cWW
279	HL_7KKV_001	7KKV	0.2062	0	GNRA	B	OLE* RNA	G	500	G	501	U	502	G	503	A	504	C	505	cWW
280	HL_4V9F_065	4V9F	0.1980	0	GNRA	0	LSU rRNA	C	2629	G	2630	U	2631	G	2632	A	2633	G	2634	cWW
281	HL_8B0X_090	8B0X	0.1841	0	GNRA (H)	a	LSU rRNA	C	2598	G	2599	U	2600	G	2601	A	2602	G	2603	cWW
282	HL_4WF9_065	4WF9	0.2047	0	GNRA	X	LSU rRNA	G	2876	G	2877	U	2878	G	2879	A	2880	C	2881	cWW
283	HL_7MRL_002	7MRL	0.1788	0	GNRA	A	tRNA	G	34	G	35	A	36	A	37	A	38	C	39	cWW
284	HL_4LFB_028	4LFB	0.1574	0	GNRA	A	SSU rRNA	G	1265	G	1266	C	1267	A	1268	A	1269	C	1270	cWW
285	HL_8B0X_096	8B0X	0.1303	0	GNRA (H)	a	LSU rRNA	A	2860	G	2861	C	2862	G	2863	A	2864	U	2865	cWW
286	HL_7A0S_068	7A0S	0.1516	0	GNRA	X	LSU rRNA	A	2831	G	2832	C	2833	A	2834	A	2835	U	2836	cWW		ntSH
287	HL_4WF9_020	4WF9	0.1500	0	GNRA	X	LSU rRNA	C	674	G	675	A	676	A	677	A	678	G	679	cWW
288	HL_1U9S_004	1U9S	0.1430	0	GNRA	A	RNase P class A	G	204	G	205	C	206	A	207	A	208	C	209	cWW		ntSH
289	HL_3G9C_012	3G9C	0.2137	0		R	glmS ribozyme	G	108	G	109	U	110	G	111	A	112	C	113	cWW
290	HL_4V9F_033	4V9F	0.2853	0	GNRA	0	LSU rRNA	C	1326	G	1327	A	1328	G	1329	A	1330	G	1331	cWW
291	HL_9DFE_069	9DFE	0.2274	0	GNRA	1B	5S rRNA	G	86	G	87	C	88	G	89	A	90	C	91	cWW
292	HL_7A0S_070	7A0S	0.1837	0	GNRA	Y	5S rRNA	C	88	G	89	C	90	A	91	G	92	G	93	cWW
293	HL_4LVW_002	4LVW	0.2147	0	GNRA	A	THF riboswitch	C	58	G	59	A	60	G	61	A	62	G	63	cWW
294	HL_9E6Q_070	9E6Q	0.1694	0	GNRA (H)	2	5S rRNA	C	93	G	94	C	95	G	96	A	97	G	98	cWW
295	HL_6DME_001	6DME	0.1589	0	GNRA	A	ppGpp Riboswitch	C	25	G	26	A	27	G	28	A	29	G	30	cWW
296	HL_8B0X_085	8B0X	0.1473	0	GNRA (H)	a	LSU rRNA	C	2378	G	2379	A	2380	A	2381	A	2382	G	2383	cWW
297	HL_8P9A_128	8P9A	0.1514	0	GNRA	AR	LSU rRNA	U	707	G	708	A	709	A	710	A	711	G	712	cWW
298	HL_8GLP_018	8GLP	0.1634	0	GNRA (H)	L5	LSU rRNA	U	1389	G	1390	A	1391	A	1392	G	1393	G	1394	cWW
299	HL_8OI5_015	8OI5	0.1395	0	GNRA (H)	1	LSU rRNA	U	705	G	706	A	707	A	708	A	709	G	710	cWW
300	HL_9AXU_015	9AXU	0.1362	0	GNRA (H)	2	LSU rRNA	U	734	G	735	A	736	A	737	A	738	G	739	cWW
301	HL_8P9A_170	8P9A	0.1375	0	GNRA	AR	LSU rRNA	U	2744	G	2745	A	2746	A	2747	A	2748	G	2749	cWW
302	HL_8OI5_055	8OI5	0.1175	0	GNRA (H)	1	LSU rRNA	U	2716	G	2717	A	2718	A	2719	A	2720	G	2721	cWW
303	HL_8GLP_064	8GLP	0.1211	0	GNRA (H)	L5	LSU rRNA	U	4321	G	4322	A	4323	A	4324	A	4325	G	4326	cWW
304	HL_9AXU_055	9AXU	0.1171	0	GNRA (H)	2	LSU rRNA	U	2839	G	2840	A	2841	A	2842	A	2843	G	2844	cWW
305	HL_9DFE_045	9DFE	0.1596	0	GNRA	1A	LSU rRNA	U	1864	G	1865	C	1866	A	1876	A	1877	G	1878	cWW
306	HL_7A0S_020	7A0S	0.1408	0	GNRA	X	LSU rRNA	C	640	G	641	A	642	A	643	A	644	G	645	cWW
307	HL_4V9F_060	4V9F	0.1029	0	GNRA	0	LSU rRNA	C	2411	G	2412	A	2413	A	2414	A	2415	G	2416	cWW
308	HL_2ZZM_003	2ZZM	0.1013	0	GNRA	B	tRNA	C	47	G	47\|\|\|A	U	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	G	47\|\|\|E	cWW
309	HL_5B2T_001	5B2T	0.0816	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
310	HL_8GLP_118	8GLP	0.0000	0	GNRA (H)	L5	LSU rRNA	U	393	G	394	A	395	A	396	G	397	A2M	398	cWW
311	HL_6N2V_001	6N2V	0.0850	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	G	24	G	25	A	26	A	27	A	28	C	29	cWW
312	HL_8B0X_050	8B0X	0.0841	0	GNRA (H)	a	LSU rRNA	G	631	G	632	A	633	A	634	A	635	C	636	cWW
313	HL_9E6Q_020	9E6Q	0.0853	0	GNRA (H)	1	LSU rRNA	G	714	G	715	A	716	A	717	A	718	C	719	cWW
314	HL_9DFE_018	9DFE	0.1053	0	GNRA	1A	LSU rRNA	G	629	G	630	A	631	A	632	A	633	C	634	cWW
315	HL_4LFB_010	4LFB	0.1306	0	GNRA	A	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW		ntSH
316	HL_8B0X_009	8B0X	0.1074	0	GNRA (H)	A	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW		ntSH
317	HL_5F9F_003	5F9F	0.1005	0	GNRA	F	RNA (24-mer)	A	10	G	11	U	12	G	13	A	14	U	15	cWW
318	HL_5TPY_004	5TPY	0.1080	0	GNRA	A	RNA (71-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntSH
319	HL_7A0S_057	7A0S	0.1402	0	GNRA	X	LSU rRNA	G	2353	G	2354	A	2355	A	2356	A	2357	C	2358	cWW
320	HL_4WF9_054	4WF9	0.1509	0	GNRA	X	LSU rRNA	C	2401	G	2402	A	2403	A	2404	A	2405	G	2406	cWW
321	HL_6GYV_006	6GYV	0.2084	0		A	Lariat-capping ribozyme	C	181	G	182	A	183	A	184	A	185	G	186	cWW
322	HL_7JNH_001	7JNH	0.2174	0	GNRA	B	Core double ENE RNA (Xtal construct) from Oryza sativa transposon	C	43	G	44	A	45	A	46	A	47	G	48	cWW
323	HL_6CB3_006	6CB3	0.2038	0	GNRA	B	RNA (99-MER)	C	76	G	77	A	78	A	79	A	80	G	81	cWW
324	HL_3NKB_002	3NKB	0.2283	0	GNRA	B	Hepatitis delta virus ribozyme	C	49	G	50	A	51	A	52	A	53	G	54	cWW
325	HL_4QK9_002	4QK9	0.1826	0	GNRA	A	cyclic di-AMP riboswitch	C	56	G	57	U	58	A	59	A	60	G	61	cWW
326	HL_2OIU_003	2OIU	0.1663	0	GNRA	P	L1 Ribozyme RNA Ligase	C	59	G	60	A	61	A	62	A	63	G	64	cWW
327	HL_7MKY_002	7MKY	0.1389	0	GNRA	A	RNA (66-MER)	G	40	G	41	A	42	A	43	A	44	C	45	cWW
328	HL_6JQ5_002	6JQ5	0.1372	0	GNRA	A	Hatchet ribozyme	C	45	G	46	A	47	A	48	A	49	G	50	cWW
329	HL_6U8D_002	6U8D	0.1235	0	GNRA	A	JIIIabc RNA (68-MER)	G	180	G	198	A	199	A	200	A	201	C	219	cWW
330	HL_9DFE_014	9DFE	0.1536	0	GNRA	1A	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW
331	HL_9J4O_002	9J4O	0.1479	0		A	tRNA	G	47\|\|\|b	G	47\|\|\|c	U	47\|\|\|d	G	47\|\|\|e	A	47\|\|\|f	C	47\|\|\|g	cWW		ntSH
332	HL_3NPQ_001	3NPQ	0.1857	0	GNRA	A	SAH (S-adenosyl-L-homocysteine) riboswitch aptamer	C	20	G	21	A	22	G	23	A	24	G	25	cWW
333	HL_6CB3_005	6CB3	0.1549	0	GNRA	B	RNA (99-MER)	G	50	G	51	A	52	A	53	A	54	C	55	cWW
334	HL_9E6Q_016	9E6Q	0.1697	0	GNRA (H)	1	LSU rRNA	C	518	G	519	G	520	A	521	A	522	G	523	cWW
335	HL_6CU1_002	6CU1	0.1697	0	GNRA	A	Y RNA-like	C	42	G	43	A	44	A	45	A	46	G	47	cWW
336	HL_8VU0_002	8VU0	0.1808	0	GNRA	C	tRNA	C	33	G	34	A	35	A	36	A	37	G	38	cWW
337	HL_6UFG_004	6UFG	0.1545	0	GNRA	A	RNA (166-MER)	C	105	G	106	A	107	A	108	A	109	G	110	cWW		ntSH
338	HL_4PQV_001	4PQV	0.2220	0	GNRA	A	Flavivirus 3' UTR stem loop IV	C	13	G	14	A	15	A	16	A	17	G	18	cWW
339	HL_3E5C_002	3E5C	0.1947	0	GNRA	A	SAM-III riboswitch aptamer (SMK box)	C	41	G	42	A	43	A	44	A	45	G	46	cWW
340	HL_9E9Q_001	9E9Q	0.1893	0		A	Sarbecovirus 5'UTR	G	29	G	30	A	31	A	32	A	33	C	34	cWW
341	HL_4OQU_001	4OQU	0.1651	0	GNRA	A	SAM-I-IV-variant	G	13	G	14	A	15	G	16	A	17	C	18	ncWW
342	HL_1UN6_004	1UN6	0.1681	0	GNRA	F	5S RIBOSOMAL RNA	G	82	G	83	A	84	A	85	A	86	C	94	cWW		ntSH
343	HL_8GLP_114	8GLP	0.1882	0	GNRA (H)	S2	SSU rRNA	C	1565	G	1566	G	1567	C	1568	A	1569	G	1570	cWW		ntSH
344	HL_4LFB_016	4LFB	0.2627	0	GNRA	A	SSU rRNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
345	HL_6SVS_001	6SVS	0.2719	0	GNRA	A	RNA (79-mer)	C	26	G	27	A	28	A	29	A	30	G	31	cWW
346	HL_6M0X_001	6M0X	0.1861	0	GNRA	B	RNA (71-MER)	C	32	G	33	A	34	A	35	A	36	G	37	cWW
347	HL_8P9A_210	8P9A	0.2368	0	GNRA	sR	SSU rRNA	C	937	G	938	A	939	A	940	A	941	G	942	cWW
348	HL_8GLP_103	8GLP	0.2357	0	GNRA (H)	S2	SSU rRNA	C	994	G	995	A	996	A	997	A	998	G	999	cWW
349	HL_8CRE_211	8CRE	0.2528	0	GNRA	CM	SSU rRNA	C	922	G	923	A	924	A	925	A	926	G	927	cWW
350	HL_8B0X_015	8B0X	0.2762	0	GNRA (H)	A	SSU rRNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
351	HL_4OQU_004	4OQU	0.2759	0	GNRA	A	SAM-I-IV-variant	C	76	G	77	A	78	G	79	A	80	G	81	cWW
352	HL_8B0X_084	8B0X	0.2343	0	GNRA (H)	a	LSU rRNA	U	2360	G	2361	A	2362	C	2363	G	2364	G	2365	cWW
353	HL_4C7O_001	4C7O	0.2702	0	GNRA	E	SRP RNA	C	19	G	20	G	21	A	22	A	23	G	24	cWW
354	HL_6YMC_001	6YMC	0.2144	0	GNRA	A	RNA (26-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW		ntSH
355	HL_8P9A_221	8P9A	0.2762	0	GNRA	sR	SSU rRNA	C	1501	G	1502	A	1503	G	1504	A	1505	G	1506	cWW		ntSH
356	HL_8CRE_222	8CRE	0.2125	0	GNRA	CM	SSU rRNA	C	1488	G	1489	A	1490	G	1491	A	1492	G	1493	cWW		ntSH
357	HL_9AXU_061	9AXU	0.2883	0	GNRA (H)	2	LSU rRNA	C	3121	G	3122	A	3123	G	3124	A	3125	G	3126	cWW		tSH
358	HL_1M5K_003	1M5K	0.2778	0	GNRA	B	Hairpin ribozyme	G	74	G	75	A	76	A	77	A	78	C	79	cWW		ntSH
359	HL_8GLP_123	8GLP	0.2833	0	GNRA (H)	L5	LSU rRNA	A2M	3724	G	3725	A	3726	A	3727	A	3728	PSU	3729	cWW
360	HL_8P9A_145	8P9A	0.3368	0	GNRA variation	AR	LSU rRNA	G	1544	A	1545	A	1546	G	1547	C	1548	U	1549	cWW
361	HL_9AXU_030	9AXU	0.2916	0	GNRA variation (H)	2	LSU rRNA	G	1578	A	1579	A	1580	G	1581	C	1582	U	1583	cWW
362	HL_8OI5_029	8OI5	0.3011	0	GNRA variation (H)	1	LSU rRNA	G	1540	A	1541	A	1542	G	1543	C	1544	U	1545	cWW
363	HL_8GLP_035	8GLP	0.3126	0	GNRA variation (H)	L5	LSU rRNA	C	2458	G	2459	A	2460	G	2461	C	2462	G	2463	cWW
364	HL_1U6B_004	1U6B	0.3794	0	GNRA variation	B	197-MER	C	153	A	154	A	155	A	156	C	157	G	158	cWW
365	HL_6LAX_002	6LAX	0.2829	0	GNRA	A	SAM-VI (S-adenosyl methionine) riboswitch aptamer	U	42	G	43	A	44	A	45	A	46	A	47	cWW		ntsS
366	HL_5VW1_003	5VW1	0.1874	0	GNRA with GA tSW pair	C	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntsS
367	HL_9L6Y_001	9L6Y	0.2176	0	GNRA	B	CS2 RNA	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntsS
368	HL_7A0S_005	7A0S	0.2852	0	GNRA	X	LSU rRNA	C	146	G	147	C	148	A	149	A	150	G	151	cWW		ntSH
369	HL_4QLM_001	4QLM	0.3368	0	GNRA	A	cyclic di-AMP riboswitch	C	54	G	55	A	56	A	57	A	58	G	59	cWW		ntSH
370	HL_9J5P_003	9J5P	0.4247	0		A	tRNA	G	50	G	51	U	52	G	53	A	54	C	55	ncWW
371	HL_8P9A_232	8P9A	0.4452	1	GNRA	AR	LSU rRNA	C	1023	G	1024	A	1025	A	1026	A	1027	G	1029	ncWW			ncSW
372	HL_5VSU_001	5VSU	0.4076	0	GNRA variation	I	U6 snRNA	U	70	G	71	C	72	A	73	U	74	A	75	cWW
373	HL_3AM1_002	3AM1	0.4767	0	GNRA variation	B	ASL-truncated tRNA	C	32	U	33	U	34	C	35	G	36	G	37	cWW
374	HL_8GLP_092	8GLP	0.4990	0		S2	SSU rRNA	U	416	C	417	A	418	G	419	G	420	G	421	cWW
375	HL_8CRE_199	8CRE	0.5721	0	GNRA variation	CM	SSU rRNA	U	366	A	367	A	368	G	369	G	370	G	371	cWW
376	HL_8B0X_099	8B0X	0.4521	0	GNRA variation (H)	A	SSU rRNA	C	522	A	523	G	524	C	525	C	526	G7M	527	cWW
377	HL_4LFB_033	4LFB	0.5152	0	GNRA variation	A	SSU rRNA	C	522	A	523	G	524	C	525	C	526	7MG	527	cWW
378	HL_1MFQ_001	1MFQ	0.4607	0	GNRA variation	A	SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
379	HL_1JID_001	1JID	0.4434	0	GNRA variation	B	HELIX 6 OF HUMAN SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
380	HL_4WF9_031	4WF9	0.3776	0	GNRA	X	LSU rRNA	C	1260	G	1261	U	1262	A	1263	A	1264	G	1265	cWW
381	HL_7A0S_031	7A0S	0.4449	0	GNRA	X	LSU rRNA	C	1235	G	1236	G	1237	A	1238	A	1239	G	1240	cWW
382	HL_8B0X_059	8B0X	0.3879	0	GNRA (H)	a	LSU rRNA	U	1224	G	1225	U	1226	G	1227	A	1228	G	1229	cWW
383	HL_9DFE_033	9DFE	0.4252	0	GNRA	1A	LSU rRNA	C	1363	G	1364	A	1365	A	1366	A	1367	G	1368	cWW
384	HL_8B0X_062	8B0X	0.4512	0	GNRA (H)	a	LSU rRNA	C	1365	G	1366	A	1367	A	1368	A	1369	G	1370	cWW
385	HL_4WF9_034	4WF9	0.5546	0	GNRA	X	LSU rRNA	C	1400	G	1401	A	1402	C	1403	A	1404	G	1405	cWW
386	HL_7A0S_034	7A0S	0.5631	0	GNRA variation	X	LSU rRNA	C	1376	G	1377	A	1378	A	1379	C	1380	G	1381	cWW
387	HL_8CRE_225	8CRE	0.4575	0	GNRA variation	CM	SSU rRNA	G	1765	U	1766	G	1767	A	1768	A	1769	C	1770	cWW
388	HL_8GLP_117	8GLP	0.4430	0	GNRA variation (H)	S2	SSU rRNA	G	1847	U	1848	G	1849	MA6	1850	MA6	1851	C	1852	cWW
389	HL_8P9A_225	8P9A	0.4798	0	GNRA variation	sR	SSU rRNA	G	1778	U	1779	G	1780	A	1781	A	1782	C	1783	cWW
390	HL_4LFB_032	4LFB	0.4486	0	GNRA	A	SSU rRNA	C	1515	G	1516	G	1517	MA6	1518	MA6	1519	G	1520	cWW
391	HL_8B0X_029	8B0X	0.4302	0	GNRA (H)	A	SSU rRNA	G	1515	2MG	1516	G	1517	MA6	1518	MA6	1519	C	1520	cWW
392	HL_8GLP_051	8GLP	0.4176	1	GNRA (H)	L5	LSU rRNA	C	3668	G	3669	C	3670	G	3671	G	3672	G	3674	cWW
393	HL_7U4A_001	7U4A	0.4225	0	GNRA variation	A	RNA (70-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW
394	HL_8P9A_192	8P9A	0.5348	1	GNRA related	sR	SSU rRNA	G	154	U	155	A	156	A	157	U	158	C	160	cWW
395	HL_8CRE_193	8CRE	0.4702	1	GNRA related	CM	SSU rRNA	G	152	U	153	A	154	A	155	U	156	C	158	cWW
396	HL_8GLP_087	8GLP	0.4136	1	GNRA related (H)	S2	SSU rRNA	G	156	U	157	A	158	A2M	159	U	160	C	162	cWW
397	HL_8GLP_081	8GLP	0.6854	1		L8	5.8S rRNA	G	122	U	124	C	125	C	126	U	127	C	128	cWW		ncWH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAG	92
GGAAAC	46
CGAGAG	19
UGAAAA	17
UGAAAG	16
CGUGAG	16
CGCAAG	15
AGAAAU	14
CGUAAG	8
CGCGAG	8
GGUGAC	7
GGUAAGC	6
GGCAAC	6
AGUGAU	6
CGGAAG	5
GGAGAC	5
GGUAAC	5
AGAAAGU	3
CGGGAG	3
CUAACG	3
GGCGAC	3
GAAGCU	3
CGAAUAG	2
UGAACAG	2
CGUAUAG	2
UGCAAG	2
UGAGAG	2
UGUGAA	2
AGCGAU	2
CGAAGG	2
GGGAGC	2
GUGAAC	2
GUAAUUC	2
UUAACG	1
CUAAUAG	1
GCAACUC	1
UCAGAAG	1
UGAAUAG	1
UUAACAG	1
UGAACG	1
UGAGAAG	1
CGAACAG	1
UGAACAA	1
GGAGUAC	1
AGAGAAU	1
CGCAUAG	1
GGAAUAC	1
UGAAGAA	1
UUAAAG	1
CGCACAG	1
CGGCGAG	1
UGAUGAG	1
CGACGAG	1
UGAUAAA	1
GGACAAC	1
UUCAAG	1
UCACCG	1
UGCAUAA	1
(PSU)GCUAACG	1
CUGAAG	1
CGGAACG	1
GGAAAUC	1
AGCUAACU	1
UGAUAAGG	1
CGAUAACG	1
UUAGCG	1
AAAAAU	1
AGAGAU	1
CUCACG	1
CCAAAG	1
UGCAAA	1
UGAGAA	1
CGUAA(OMG)	1
CGCGGG	1
UGUAAA	1
(OMC)GUGAG	1
AGCAAU	1
CGCAGG	1
UGAAGG	1
CGUAGG	1
UGAAG(A2M)	1
CGGCAG	1
UGACGG	1
(A2M)GAAA(PSU)	1
CGAGCG	1
CAAACG	1
CGAAAUG	1
UGCAUA	1
CUUCGG	1
UCAGGG	1
UAAGGG	1
CAGCC(G7M)	1
CAGCC(7MG)	1
UGUGAG	1
CGACAG	1
CGAACG	1
GUGC	1
CGGG	1
GGC	1
CGCGGCG	1
GUAUUC	1
GUUCCUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	186
GUGA	33
GAGA	28
GCAA	25
GUAA	15
GCGA	13
GUAAG	6
GGAA	5
UAAC	4
GAAUA	4
GAACA	4
GAAG	4
GAAAG	3
UGAA	3
GGGA	3
AAGC	3
GAGAA	2
GCAUA	2
GUAUA	2
GCUAAC	2
GAAAU	2
AGCC	2
GGAG	2
UAAUU	2
UAAUA	1
CAACU	1
CAGAA	1
UAACA	1
GAAC(A2M)	1
GAGUA	1
GAAGA	1
UAAA	1
GCACA	1
GGCGA	1
GAUGA	1
GACGA	1
GAUAA	1
GACAA	1
UCAA	1
CACC	1
GGAAC	1
GAUAAG	1
GAUAAC	1
UAGC	1
AAAA	1
UCAC	1
CAAA	1
GCGG	1
GCAG	1
GUAG	1
GGCA	1
GACG	1
GAGC	1
AAAC	1
GCAU	1
UUCG	1
CAGG	1
AAGG	1
GACA	1
GAAC	1
UG(MA6)(MA6)	1
GG(MA6)(MA6)	1
(2MG)G(MA6)(MA6)	1
GCGGC	1
UA(A2M)UU	1
UUCCU	1

Release history

Release	4.1
Date	2025-09-10
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA (269)
GNRA (H) (83)
(21)
GNRA variation (13)
GNRA variation (H) (5)
GNRA with GA tSW pair (2)
GNRA related (2)
GNRA with GA tSW pair (H) (1)
GNRA related (H) (1)
Basepair signature: cWW-F-F-F-F
Heat map statistics: Min 0.04 | Avg 0.30 | Max 0.97

Help

Coloring options: Nucleotide numbers

Motif HL_34789.2 Version HL_34789.2 of this group appears in releases 4.1 to 4.1 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_34789.2 Version HL_34789.2 of this group appears in releases 4.1 to 4.1

Download

Csv

Json