1 HL_5VSU_001 5VSU 0.5582 0 GNRA variation I U6 snRNA U 70 G 71 C 72 A 73 U 74 A 75 cWW
2 HL_8P9A_232 8P9A 0.4617 1 GNRA AR LSU rRNA C 1023 G 1024 A 1025 A 1026 A 1027 G 1029 ncWW ncSW
3 HL_4V9F_022 4V9F 0.4955 0 GNRA 0 LSU rRNA U 733 U 734 C 735 A 736 A 737 G 738 cWW
4 HL_8DP3_003 8DP3 0.4282 0 GNRA R Enterovirus 5' cloverleaf cis-acting replication element U 62 C 63 A 64 C 65 C 66 G 67 cWW
5 HL_6ASO_001 6ASO 0.3179 1 GNRA I U6 snRNA U 70 G 71 C 72 U 74 A 75 A 76 ncWW tSH
6 HL_4WF9_071 4WF9 0.4023 0 GNRA X LSU rRNA U 1762 U 1763 A 1764 A 1765 C 1766 G 1767 ncWW ntsS
7 HL_8CRE_199 8CRE 0.5282 0 GNRA variation CM SSU rRNA U 366 A 367 A 368 G 369 G 370 G 371 cWW
8 HL_4LFB_033 4LFB 0.4726 0 GNRA variation A SSU rRNA C 522 A 523 G 524 C 525 C 526 7MG 527 cWW
9 HL_5J7L_205 5J7L 0.4454 0 GNRA variation AA SSU rRNA C 522 A 523 G 524 C 525 C 526 G7M 527 cWW
10 HL_3AM1_002 3AM1 0.4075 0 GNRA variation B ASL-truncated tRNA C 32 U 33 U 34 C 35 G 36 G 37 cWW
11 HL_9DFE_033 9DFE 0.3904 0 GNRA 1A LSU rRNA C 1363 G 1364 A 1365 A 1366 A 1367 G 1368 cWW
12 HL_5J7L_167 5J7L 0.4157 0 GNRA DA LSU rRNA C 1363 G 1364 A 1365 A 1366 A 1367 G 1368 cWW
13 HL_4WF9_034 4WF9 0.5133 0 GNRA X LSU rRNA C 1400 G 1401 A 1402 C 1403 A 1404 G 1405 cWW
14 HL_7A0S_034 7A0S 0.5414 0 GNRA variation X LSU rRNA C 1376 G 1377 A 1378 A 1379 C 1380 G 1381 cWW
15 HL_8CRE_225 8CRE 0.4507 0 GNRA variation CM SSU rRNA G 1765 U 1766 G 1767 A 1768 A 1769 C 1770 cWW
16 HL_8P9A_225 8P9A 0.4825 0 GNRA variation sR SSU rRNA G 1778 U 1779 G 1780 A 1781 A 1782 C 1783 cWW
17 HL_4LFB_032 4LFB 0.4529 0 GNRA A SSU rRNA C 1515 G 1516 G 1517 MA6 1518 MA6 1519 G 1520 cWW
18 HL_5J7L_031 5J7L 0.4499 0 GNRA AA SSU rRNA G 1515 2MG 1516 G 1517 MA6 1518 MA6 1519 C 1520 cWW
19 HL_1MFQ_001 1MFQ 0.4342 0 GNRA variation A SRP RNA G 146 G 147 G 148 A 149 G 150 C 151 cWW
20 HL_1JID_001 1JID 0.4121 0 GNRA variation B HELIX 6 OF HUMAN SRP RNA G 146 G 147 G 148 A 149 G 150 C 151 cWW
21 HL_1L9A_001 1L9A 0.4632 0 GNRA variation B SRP RNA G 146 G 147 G 148 A 149 G 150 C 151 cWW
22 HL_3KTW_001 3KTW 0.5356 0 GNRA C SRP RNA U 163 G 164 G 165 A 166 G 167 G 168 cWW
23 HL_7A0S_031 7A0S 0.4549 0 GNRA X LSU rRNA C 1235 G 1236 G 1237 A 1238 A 1239 G 1240 cWW
24 HL_4WF9_031 4WF9 0.3851 0 GNRA X LSU rRNA C 1260 G 1261 U 1262 A 1263 A 1264 G 1265 cWW
25 HL_5J7L_164 5J7L 0.3532 0 GNRA DA LSU rRNA U 1222 G 1223 U 1224 G 1225 A 1226 G 1227 cWW
26 HL_7U4A_001 7U4A 0.4653 0 GNRA variation A RNA (70-MER) C 13 G 14 A 15 A 16 A 17 G 18 cWW
27 HL_8P9A_145 8P9A 0.3811 0 GNRA variation AR LSU rRNA G 1544 A 1545 A 1546 G 1547 C 1548 U 1549 cWW
28 HL_8CRE_032 8CRE 0.3731 0 GNRA variation 1 LSU rRNA G 1540 A 1541 A 1542 G 1543 C 1544 U 1545 cWW
29 HL_1U6B_004 1U6B 0.4150 0 GNRA variation B 197-MER C 153 A 154 A 155 A 156 C 157 G 158 cWW
30 HL_3AGV_001 3AGV 0.3264 0 GNRA U RNA (24-mer) CFZ 11 G 12 A 13 A 14 A 15 G 16 cWW
31 HL_6LAX_002 6LAX 0.3068 0 GNRA A SAM-VI (S-adenosyl methionine) riboswitch aptamer U 42 G 43 A 44 A 45 A 46 A 47 cWW ntsS
32 HL_5VW1_003 5VW1 0.2251 0 GNRA with GA tSW pair C tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW ntsS
33 HL_9L6Y_001 9L6Y 0.2646 0 GNRA B CS2 RNA C 13 G 14 A 15 A 16 A 17 G 18 cWW ntsS
34 HL_1M5K_003 1M5K 0.2853 0 GNRA B Hairpin ribozyme G 74 G 75 A 76 A 77 A 78 C 79 cWW ntSH
35 HL_5J7L_190 5J7L 0.2246 0 GNRA DA LSU rRNA U 2356 G 2357 A 2358 C 2359 G 2360 G 2361 cWW
36 HL_4C7O_001 4C7O 0.2717 0 GNRA E SRP RNA C 19 G 20 G 21 A 22 A 23 G 24 cWW
37 HL_6YMC_001 6YMC 0.2194 0 GNRA A RNA (26-MER) G 11 G 12 A 13 A 14 A 15 C 16 cWW ntSH
38 HL_8P9A_221 8P9A 0.2591 0 GNRA sR SSU rRNA C 1501 G 1502 A 1503 G 1504 A 1505 G 1506 cWW ntSH
39 HL_8CRE_222 8CRE 0.1973 0 GNRA CM SSU rRNA C 1488 G 1489 A 1490 G 1491 A 1492 G 1493 cWW ntSH
40 HL_4V9F_070 4V9F 0.1796 0 GNRA 0 LSU rRNA G 2876 G 2877 U 2878 A 2879 A 2880 C 2881 cWW ntSH
41 HL_6CB3_004 6CB3 0.1815 0 GNRA B RNA (99-MER) G 20 G 21 A 22 A 23 A 24 C 25 cWW ntSH
42 HL_6AZ4_001 6AZ4 0.2118 0 GNRA A RNA (32-MER) U 20 G 21 A 22 A 23 A 24 G 25 cWW ntSH
43 HL_8XPP_001 8XPP 0.1723 0 GNRA B RNA (35-MER) U 588 G 589 A 590 A 591 A 592 G 593 cWW ntSH
44 HL_7QQP_001 7QQP 0.1597 0 GNRA A tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW ntSH
45 HL_7QR0_001 7QR0 0.1743 0 GNRA A tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW ntSH
46 HL_4AOB_002 4AOB 0.1600 0 GNRA A SAM-I riboswitch A 49 A 50 A 51 A 52 A 53 U 54 cWW tSH
47 HL_7ZO1_001 7ZO1 0.1472 0 GNRA A tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW
48 HL_3NVI_002 3NVI 0.1460 0 GNRA F RNA (24-mer) C 9 G 10 A 11 A 12 A 13 G 14 cWW ntSH
49 HL_4NLF_001 4NLF 0.1563 0 GNRA A 23S ribosomal RNA Sarcin Ricin Loop C 2658 G 2659 A 2660 G 2661 A 2662 G 2663 cWW ntSH
50 HL_8HZL_002 8HZL 0.1029 0 GNRA B RNA (84-MER) C 49 G 50 A 51 A 52 A 53 G 54 cWW ntSH
51 HL_8CRE_018 8CRE 0.1544 0 GNRA 1 LSU rRNA G 840 G 841 A 842 A 843 A 844 C 845 cWW ntSH
52 HL_7ENI_001 7ENI 0.1585 0 GNRA B sgRNA (74-MER) G 34 G 35 A 36 A 37 A 38 C 39 cWW ntSH
53 HL_5J7L_003 5J7L 0.1628 0 GNRA AA SSU rRNA G 158 G 159 A 160 A 161 A 162 C 163 cWW ntSH
54 HL_4LFB_003 4LFB 0.2285 0 GNRA A SSU rRNA G 158 G 159 A 160 A 161 A 162 C 163 cWW ntSH
55 HL_4V9F_040 4V9F 0.2094 0 GNRA 0 LSU rRNA G 1628 G 1629 A 1630 A 1631 A 1632 C 1633 cWW ntSH
56 HL_4V9F_048 4V9F 0.1861 0 GNRA 0 LSU rRNA C 1862 G 1863 C 1864 A 1865 A 1866 G 1867 cWW ntSH
57 HL_5J7L_020 5J7L 0.1849 0 GNRA AA SSU rRNA C 897 G 898 C 899 A 900 A 901 G 902 cWW ntSH
58 HL_4LFB_020 4LFB 0.1657 0 GNRA A SSU rRNA C 897 G 898 C 899 A 900 A 901 G 902 cWW ntSH
59 HL_8P9A_214 8P9A 0.1541 0 GNRA sR SSU rRNA C 1121 G 1122 C 1123 A 1124 A 1125 G 1126 cWW ntSH
60 HL_7ELQ_001 7ELQ 0.1546 0 GNRA A NMT1 RNA C 22 G 23 A 24 A 25 A 26 G 27 cWW ntSH
61 HL_8CRE_215 8CRE 0.1365 0 GNRA CM SSU rRNA C 1106 G 1107 C 1108 A 1109 A 1110 G 1111 cWW ntSH
62 HL_3LQX_001 3LQX 0.1277 0 GNRA B SRP RNA C 153 G 154 A 155 A 156 A 157 G 158 cWW tSH
63 HL_6N2V_003 6N2V 0.1219 0 GNRA A X. oryzae Mn riboswitch optimized construct C 76 G 77 A 78 A 79 A 80 G 81 cWW ntSH
64 HL_1HMH_003 1HMH 0.1234 0 GNRA E HAMMERHEAD RIBOZYME-RNA STRAND C 104 G 21|||L A 22|||L A 23|||L A 24|||L G 114 cWW ntSH
65 HL_5M0I_002 5M0I 0.1305 0 GNRA F ASH1-E3 element, RNA (28-MER) C 12 G 13 A 14 A 15 A 16 G 17 cWW ntSH
66 HL_5M0I_001 5M0I 0.1564 0 GNRA E ASH1-E3 element, RNA (28-MER) C 12 G 13 A 14 A 15 A 16 G 17 cWW ntSH
67 HL_5M0J_002 5M0J 0.1625 0 GNRA F ASH1 E3 (28 nt-loop) C 12 G 13 A 14 A 15 A 16 G 17 cWW ntSH
68 HL_5M0J_001 5M0J 0.2019 0 GNRA E ASH1 E3 (28 nt-loop) C 12 G 13 A 14 A 15 A 16 G 17 cWW ntSH
69 HL_9DFE_056 9DFE 0.1678 0 GNRA 1A LSU rRNA C 2374 G 2375 A 2376 A 2377 A 2378 G 2379 cWW ntSH
70 HL_4R4V_004 4R4V 0.1170 0 GNRA A VS ribozyme RNA C 735 G 736 U 737 A 738 A 739 G 740 cWW ntSH
71 HL_4V9F_072 4V9F 0.1769 0 GNRA 9 5S rRNA C 89 G 90 C 91 G 92 A 93 G 94 cWW ntSH
72 HL_3AM1_003 3AM1 0.1488 0 GNRA B ASL-truncated tRNA C 45 G 46 A 47 G 48 A 49 G 50 cWW ntSH
73 HL_8X5V_001 8X5V 0.1027 0 GNRA B RNA (110-mer) U 33 G 34 A 35 A 36 A 37 A 38 cWW ntSH
74 HL_5DDP_001 5DDP 0.1402 0 GNRA A glnA G 11 G 12 A 13 A 14 A 15 C 16 cWW ntSH
75 HL_4V9F_023 4V9F 0.1314 0 GNRA 0 LSU rRNA C 804 G 805 A 806 A 807 A 808 G 809 cWW ntSH
76 HL_1Q96_001 1Q96 0.1285 0 GNRA A sarcin/ricin 28S rRNA U 13 G 14 A 15 G 16 A 17 A 18 cWW ntSH
77 HL_4Y1M_002 4Y1M 0.1261 0 GNRA B E. coli yybP-ykoY riboswitch C 24 G 25 A 26 A 27 A 28 G 29 cWW ntSH
78 HL_3E5C_001 3E5C 0.1440 0 GNRA A SAM-III riboswitch aptamer (SMK box) G 18 G 19 A 20 A 21 A 22 C 23 cWW tSH
79 HL_5J7L_010 5J7L 0.1405 0 GNRA AA SSU rRNA C 379 G 380 C 381 A 382 A 383 G 384 cWW ntSH
80 HL_4LFB_010 4LFB 0.1579 0 GNRA A SSU rRNA C 379 G 380 C 381 A 382 A 383 G 384 cWW ntSH
81 HL_8P9A_185 8P9A 0.1346 0 GNRA AS 5S rRNA G 88 G 89 U 90 G 91 A 92 C 93 cWW ntSH
82 HL_8OI5_070 8OI5 0.1525 0 GNRA 3 5S rRNA G 88 G 89 A 90 G 91 A 92 C 93 cWW ntSH
83 HL_7U4A_003 7U4A 0.1629 0 GNRA A RNA (70-MER) C 62 G 63 A 64 A 65 A 66 G 67 cWW ntSH
84 HL_5J7L_004 5J7L 0.1418 0 GNRA AA SSU rRNA C 186 G 187 C 188 A 189 A 190 G 191 cWW ntSH
85 HL_4V9F_020 4V9F 0.1338 0 GNRA 0 LSU rRNA G 690 G 691 A 692 A 693 A 694 C 695 cWW ntSH
86 HL_9DFE_044 9DFE 0.1334 0 GNRA 1A LSU rRNA C 1806 G 1807 U 1808 A 1809 A 1810 G 1811 cWW ntSH
87 HL_3NDB_002 3NDB 0.1531 0 GNRA M SRP RNA C 208 G 209 G 210 A 211 A 212 G 213 cWW tSH
88 HL_1L9A_002 1L9A 0.1386 0 GNRA B SRP RNA G 197 G 198 A 199 A 200 A 201 C 202 cWW ntSH
89 HL_8P9A_176 8P9A 0.1555 0 GNRA AR LSU rRNA C 3025 G 3026 A 3027 G 3028 A 3029 G 3030 cWW ntSH
90 HL_4V9F_066 4V9F 0.1347 0 GNRA 0 LSU rRNA C 2695 G 2696 A 2697 G 2698 A 2699 G 2700 cWW ntSH
91 HL_8CRE_064 8CRE 0.1309 0 GNRA 1 LSU rRNA C 2997 G 2998 A 2999 G 3000 A 3001 G 3002 cWW tSH
92 HL_8P9A_129 8P9A 0.1499 0 GNRA AR LSU rRNA C 732 G 733 C 734 A 735 A 736 G 737 cWW ntSH
93 HL_7R97_001 7R97 0.1426 0 GNRA C RNA (28-MER) C 11 G 12 C 13 A 14 A 15 G 16 cWW tSH
94 HL_7A0S_063 7A0S 0.1362 0 GNRA X LSU rRNA C 2637 G 2638 A 2639 G 2640 A 2641 G 2642 cWW tSH
95 HL_4Y1M_003 4Y1M 0.1091 0 GNRA B E. coli yybP-ykoY riboswitch U 55 G 56 A 57 A 58 A 59 A 60 cWW ntSH
96 HL_4V9F_009 4V9F 0.1240 0 GNRA 0 LSU rRNA C 252 U 253 C 254 A 255 C 256 G 257 cWW ntSH
97 HL_6N2V_002 6N2V 0.0929 0 GNRA A X. oryzae Mn riboswitch optimized construct C 56 G 57 A 58 A 59 A 60 G 61 cWW ntSH
98 HL_4V9F_054 4V9F 0.0929 0 GNRA 0 LSU rRNA C 2248 G 2249 G 2250 G 2251 A 2252 G 2253 cWW ntSH
99 HL_1RLG_002 1RLG 0.0825 0 GNRA D 25-MER C 9 G 10 A 11 A 12 A 13 G 14 cWW ntSH
100 HL_5X2G_001 5X2G 0.0897 0 GNRA B sgRNA U 32 G 33 A 34 A 35 A 36 A 37 cWW ntSH
101 HL_5B2P_001 5B2P 0.1003 0 GNRA B Guide RNA C 35 G 36 A 37 A 38 A 39 G 40 cWW tSH
102 HL_7ZO1_003 7ZO1 0.1135 0 GNRA A tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW ntSH
103 HL_1MZP_001 1MZP 0.1284 0 GNRA B fragment of 23S rRNA C 25 G 26 C 27 A 28 A 29 G 30 cWW ntSH
104 HL_4RUM_002 4RUM 0.1039 0 GNRA A NiCo riboswitch C 51 G 52 A 53 A 54 A 55 G 56 cWW ntSH
105 HL_3MOJ_001 3MOJ 0.1032 0 GNRA A LSU rRNA G 2529 G 2530 A 2531 A 2532 A 2533 C 2534 cWW ntSH
106 HL_3RW6_001 3RW6 0.1000 0 GNRA H constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA G 27 G 28 A 29 A 30 A 31 C 32 cWW tSH
107 HL_8D28_002 8D28 0.0725 0 GNRA B RNA (33-MER) C 13 G 14 A 15 A 16 A 17 G 18 cWW ntSH
108 HL_8Z8U_001 8Z8U 0.1032 0 GNRA A RNA (41-MER) C 19 G 20 A 21 A 22 A 23 G 24 cWW ntSH
109 HL_5B2T_003 5B2T 0.1165 0 GNRA A tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW ntSH
110 HL_8ITS_001 8ITS 0.1136 0 GNRA A RNA (46-MER) C 15 G 16 A 17 A 18 A 19 G 20 cWW ntSH
111 HL_9DID_002 9DID 0.0948 0 GNRA B frameshifting pseudoknot RNA C 61 G 62 A 63 A 64 A 65 G 66 cWW ntSH
112 HL_6TFF_001 6TFF 0.0775 0 GNRA A nadA RNA C 27 G 28 A 29 A 30 A 31 G 32 cWW ntSH
113 HL_8JOZ_003 8JOZ 0.0614 0 GNRA B tRNA C 47|||B G 47|||C A 47|||D A 47|||E A 47|||F G 47|||G cWW ntSH
114 HL_8ITS_002 8ITS 0.0733 0 GNRA A RNA (46-MER) C 31 G 32 A 33 A 34 A 35 G 36 cWW ntSH
115 HL_4OQU_003 4OQU 0.1064 0 GNRA A SAM-I-IV-variant G 57 G 58 A 59 G 60 A 61 C 62 cWW ntSH
116 HL_5FJC_002 5FJC 0.1053 0 GNRA A SAM-I riboswitch A 49 G 50 A 51 A 52 A 53 U 54 cWW ntSH
117 HL_9DXL_001 9DXL 0.1057 0 GNRA A RhoBAST aptamer G 7 G 8 A 9 A 10 A 11 C 12 cWW ntSH
118 HL_9DFE_062 9DFE 0.1144 0 GNRA 1A LSU rRNA C 2658 G 2659 A 2660 G 2661 A 2662 G 2663 cWW tSH
119 HL_5J7L_197 5J7L 0.1125 0 GNRA DA LSU rRNA C 2658 G 2659 A 2660 G 2661 A 2662 G 2663 cWW ntSH
120 HL_9L6X_002 9L6X 0.0888 0 GNRA D CS1 RNA C 16 G 17 A 18 A 19 A 20 G 21 cWW ntSH
121 HL_1G1X_001 1G1X 0.0729 0 GNRA D 16S RIBOSOMAL RNA C 590 G 591 A 592 A 593 A 594 G 649 cWW ntSH
122 HL_8P9A_123 8P9A 0.0759 0 GNRA AR LSU rRNA U 382 G 383 A 384 A 385 A 386 A 387 cWW ntSH
123 HL_8P9A_131 8P9A 0.1159 0 GNRA AR LSU rRNA G 844 G 845 A 846 A 847 A 848 C 849 cWW ntSH
124 HL_3PDR_001 3PDR 0.1351 0 GNRA X M-box riboswitch (ykoK leader) C 68 C 69 A 70 A 71 A 72 G 73 cWW ntSH
125 HL_4LCK_004 4LCK 0.1015 0 GNRA B tRNA C 71 G 72 A 73 A 74 A 75 G 76 cWW ntSH
126 HL_2OIU_001 2OIU 0.0996 0 GNRA P L1 Ribozyme RNA Ligase C 10 G 11 A 12 A 13 A 14 G 15 cWW ntSH
127 HL_5VW1_001 5VW1 0.1076 0 GNRA C tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW
128 HL_4ENC_002 4ENC 0.1037 0 GNRA A Fluoride riboswitch U 28 G 29 A 30 A 31 A 32 A 33 cWW ntSH
129 HL_7K16_001 7K16 0.1121 0 GNRA P RNA (51-MER) C 13 G 14 A 15 A 16 A 17 G 18 cWW ntSH
130 HL_5FJC_003 5FJC 0.0966 0 GNRA A SAM-I riboswitch G 73 G 74 A 75 A 76 A 77 C 78 cWW ntSH
131 HL_3MXH_001 3MXH 0.0925 0 GNRA R Cyclic di-GMP-I riboswitch C 31 G 32 A 33 A 34 A 35 G 36 cWW ntSH
132 HL_4AOB_003 4AOB 0.0817 0 GNRA A SAM-I riboswitch G 73 G 74 A 75 A 76 A 77 C 78 cWW ntSH
133 HL_5TPY_006 5TPY 0.0723 0 GNRA A RNA (71-MER) C 62 G 63 A 64 A 65 A 66 G 67 cWW ntSH
134 HL_7D7W_001 7D7W 0.0900 0 GNRA A nadA RNA C 27 G 28 A 29 A 30 A 31 G 32 cWW ntSH
135 HL_7OZQ_004 7OZQ 0.0923 0 GNRA H RNA C 14 G 15 A 16 A 17 A 18 G 19 cWW ntSH
136 HL_3IGI_006 3IGI 0.0905 0 GNRA A Group II catalytic intron D1-D4-3 G 274 G 275 A 276 A 277 A 278 C 279 cWW ntSH
137 HL_6DVK_001 6DVK 0.0896 0 GNRA H RNA (95-MER) G 45 G 46 A 47 A 48 A 49 C 50 cWW ntSH
138 HL_3IWN_001 3IWN 0.1446 0 GNRA A Cyclic di-GMP-I riboswitch C 21 G 22 A 23 A 24 A 25 G 26 cWW ntSH
139 HL_5TPY_004 5TPY 0.1325 0 GNRA A RNA (71-MER) C 13 G 14 A 15 A 16 A 17 G 18 cWW ntSH
140 HL_3NMU_002 3NMU 0.1255 0 GNRA E RNA (34-MER) C 18 G 19 A 20 A 21 A 22 G 23 cWW ntSH
141 HL_2IL9_003 2IL9 0.1470 0 GNRA A CrPV IRES C 6119 G 6119|||A A 6119|||B A 6119|||C A 6119|||D G 6119|||E ncWW tSH
142 HL_1MFQ_002 1MFQ 0.1750 0 GNRA A SRP RNA G 197 G 198 A 199 A 200 A 201 C 202 cWW tSH
143 HL_6JDV_002 6JDV 0.1833 0 GNRA B CRISPR RNA direct repeat element U 86 G 87 A 88 A 89 A 90 A 91 cWW tSH
144 HL_8KAJ_002 8KAJ 0.1576 0 GNRA I tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW
145 HL_3CUL_001 3CUL 0.1480 0 GNRA C RNA (92-MER) C 7 G 8 A 9 A 10 A 11 G 12 cWW ntSH
146 HL_5DCV_002 5DCV 0.1193 0 GNRA D RNA (47-MER) G 26 G 27 A 28 A 29 A 30 C 31 cWW ntSH
147 HL_5XTM_002 5XTM 0.1281 0 GNRA D RNA (47-MER) G 24 G 25 A 26 A 27 A 28 C 29 cWW ntSH
148 HL_5XTM_001 5XTM 0.1299 0 GNRA B RNA (47-MER) G 24 G 25 A 26 A 27 A 28 C 29 cWW ntSH
149 HL_7UZ0_002 7UZ0 0.1184 0 GNRA A tRNA C 36 G 37 A 38 A 39 A 40 G 41 cWW ntSH
150 HL_5Y7M_002 5Y7M 0.0998 0 GNRA D RNA (52-MER) C 24 G 25 A 26 A 27 A 28 G 29 cWW ntSH
151 HL_1NBS_007 1NBS 0.1614 0 GNRA B RNase P class B A 204 G 205 A 206 A 207 A 208 U 209 cWW ntSH
152 HL_2R8S_001 2R8S 0.0797 0 GNRA R P4-P6 RNA RIBOZYME DOMAIN G 149 G 150 A 151 A 152 A 153 C 154 cWW ntSH
153 HL_5D5L_001 5D5L 0.0733 0 GNRA A PreQ1-II riboswitch C 8 G 9 A 10 A 11 A 12 G 13 cWW ntSH
154 HL_5UZ6_001 5UZ6 0.0000 0 GNRA A RNA (25-MER) C 15 G 16 A 17 A 18 A 19 G 20 cWW ntSH
155 HL_8HZE_002 8HZE 0.0544 0 GNRA B RNA (36-MER) C 19 G 20 A 21 A 22 A 23 G 24 cWW ntSH
156 HL_4JF2_001 4JF2 0.0747 0 GNRA A PreQ1-II Riboswitch C 8 G 9 A 10 A 11 A 12 G 13 cWW ntSH
157 HL_5VCI_001 5VCI 0.0762 0 GNRA A RNA (22-mer) C 16 G 17 A 18 A 19 A 20 G 21 cWW ntSH
158 HL_4PLX_001 4PLX 0.0841 0 GNRA A Core ENE hairpin and A-rich tract from MALAT1 C 24 G 25 A 26 A 27 A 28 G 29 cWW ntSH
159 HL_7WIE_001 7WIE 0.0994 0 GNRA V THF-II riboswitch (folE RNA) C 31 G 32 A 33 A 34 A 35 G 37 cWW ntSH
160 HL_1KH6_002 1KH6 0.0917 0 GNRA A JIIIabc C 28 G 29 A 30 A 31 A 32 G 33 cWW ntSH
161 HL_1U6B_001 1U6B 0.0954 0 GNRA B 197-MER G 23 G 24 A 25 A 26 A 27 C 28 cWW ntSH
162 HL_4LFB_027 4LFB 0.0995 0 GNRA A SSU rRNA C 1165 G 1166 A 1167 A 1168 A 1169 G 1171 cWW ntSH
163 HL_9E9Q_003 9E9Q 0.1317 0 A Sarbecovirus 5'UTR C 83 G 84 A 85 A 86 A 87 G 88 cWW ntSH
164 HL_1HMH_001 1HMH 0.0903 0 GNRA A HAMMERHEAD RIBOZYME-RNA STRAND C 104 G 21|||L A 22|||L A 23|||L A 24|||L G 114 cWW ntSH
165 HL_7QQP_003 7QQP 0.1477 0 GNRA A tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW ntSH
166 HL_9FN3_002 9FN3 0.1210 0 GNRA A SAMURI-ProSeDMA C 42 G 43 A 44 A 45 A 46 G 47 cWW ntSH
167 HL_9FN3_004 9FN3 0.1495 0 GNRA B SAMURI-ProSeDMA C 42 G 43 A 44 A 45 A 46 G 47 cWW ntSH
168 HL_4BW0_001 4BW0 0.1356 0 GNRA A HMKT-7 C 9 G 10 A 11 A 12 A 13 G 14 cWW ntSH
169 HL_6JQ5_004 6JQ5 0.1178 0 GNRA B Hatchet ribozyme C 45 G 46 A 47 A 48 A 49 G 50 cWW ntSH
170 HL_4FRG_002 4FRG 0.1145 0 GNRA B Cobalamin riboswitch C 46 G 47 A 48 A 49 A 50 G 51 cWW ntSH
171 HL_5M0H_001 5M0H 0.1335 0 GNRA A ASH1 E3 (42 nt-TL/TLR) U 21 G 22 A 23 A 24 A 25 G 26 cWW ntSH
172 HL_6WPI_001 6WPI 0.1361 0 GNRA B RNA (47-MER) U 25 G 26 A 27 A 28 A 29 G 30 cWW ntSH
173 HL_4PCJ_001 4PCJ 0.1320 0 GNRA A trCUG-3('5) U 16 G 17 A 18 A 19 A 20 G 21 cWW ntSH
174 HL_5BTM_001 5BTM 0.1385 0 GNRA A RNA (55-mer) U 26 G 27 A 28 A 29 A 30 G 31 cWW ntSH
175 HL_4K27_001 4K27 0.1113 0 GNRA U Myotonic Dystrophy Type 2 RNA U 26 G 27 A 28 A 29 A 30 G 31 cWW ntSH
176 HL_1KXK_001 1KXK 0.1203 0 GNRA A Group II catalytic intron U 33 G 34 A 35 A 36 A 37 G 38 cWW ntSH
177 HL_4K50_001 4K50 0.0956 0 GNRA B RNA (33-MER) U 587 G 588 A 589 A 590 A 591 G 592 cWW ntSH
178 HL_8SYK_004 8SYK 0.1486 0 GNRA A RNA device 43 truncation mutant 3 (U100C) C 79 G 80 A 81 A 82 A 83 G 84 cWW ntSH
179 HL_3V7E_003 3V7E 0.1402 0 GNRA C SAM-I riboswitch G 105 G 106 A 107 A 108 A 109 C 110 cWW ntSH
180 HL_5DDO_001 5DDO 0.1724 0 GNRA A L-glutamine riboswitch (58-MER) G 11 G 12 A 13 A 14 A 15 C 16 cWW
181 HL_9DFE_015 9DFE 0.1490 0 GNRA 1A LSU rRNA C 487 G 488 G 489 G 491 A 492 G 493 cWW ntSH
182 HL_7A0S_016 7A0S 0.1915 0 GNRA X LSU rRNA C 498 G 499 G 500 G 501 A 502 G 503 cWW ntSH
183 HL_4WF9_016 4WF9 0.1862 0 GNRA X LSU rRNA C 533 G 534 G 535 A 536 A 537 G 538 cWW ntSH
184 HL_4W90_003 4W90 0.1595 0 GNRA C cyclic di-AMP riboswitch C 82 G 83 A 84 A 85 A 86 G 87 cWW ntSH
185 HL_5J7L_148 5J7L 0.2175 1 GNRA DA LSU rRNA C 487 G 488 G 489 G 491 A 492 G 493 cWW tSH
186 HL_3P22_001 3P22 0.1788 0 GNRA A Core ENE hairpin from KSHV PAN RNA C 17 G 18 A 19 A 20 A 21 G 22 cWW ntSH
187 HL_8Z8U_002 8Z8U 0.1795 0 GNRA B RNA (41-MER) C 19 G 20 A 21 A 22 A 23 G 24 cWW ntSH
188 HL_7QQX_003 7QQX 0.1449 0 GNRA A tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW ntSH
189 HL_3KTW_002 3KTW 0.1531 0 GNRA C SRP RNA C 209 G 210 G 211 A 212 A 213 G 214 cWW ntSH
190 HL_5F9R_003 5F9R 0.1549 0 GNRA A tracrRNA U 90 G 91 A 92 A 93 A 94 A 95 cWW ntSH
191 HL_6UFH_005 6UFH 0.1611 0 GNRA A RNA (167-MER) C 145 G 146 A 147 A 148 A 149 G 150 cWW ntSH
192 HL_9DID_001 9DID 0.1052 0 GNRA A frameshifting pseudoknot RNA C 61 G 62 A 63 A 64 A 65 G 66 cWW ntSH
193 HL_5J7L_019 5J7L 0.1790 0 GNRA AA SSU rRNA C 862 U 863 A 864 A 865 C 866 G 867 cWW ntSH
194 HL_4LFB_019 4LFB 0.1580 0 GNRA A SSU rRNA C 862 U 863 A 864 A 865 C 866 G 867 cWW ntSH
195 HL_3D0U_004 3D0U 0.1596 0 GNRA A Lysine riboswitch C 142 G 143 A 144 A 145 A 146 G 147 cWW ntSH
196 HL_1U9S_002 1U9S 0.1517 0 GNRA A RNase P class A G 99 G 100 U 101 A 102 A 103 C 104 cWW ntSH
197 HL_7UQ6_002 7UQ6 0.1445 0 GNRA B tRNA G 41 G 42 A 43 A 44 A 45 C 46 cWW ntSH
198 HL_5FQ5_001 5FQ5 0.1939 0 GNRA A tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW
199 HL_4WF9_060 4WF9 0.1889 0 GNRA X LSU rRNA C 2685 G 2686 A 2687 G 2688 A 2689 G 2690 cWW ntSH
200 HL_5FQ5_003 5FQ5 0.2318 0 GNRA A tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 ncWW ntSH
201 HL_7QR0_003 7QR0 0.2040 0 GNRA A tracrRNA U 72 G 73 A 74 A 75 A 76 A 77 cWW ntSH
202 HL_4LFB_022 4LFB 0.2474 0 GNRA A SSU rRNA U 1012 G 1013 A 1014 A 1015 A 1016 G 1017 cWW ntSH
203 HL_8P9A_158 8P9A 0.2093 1 GNRA AR LSU rRNA A 2164 G 2165 A 2166 A 2167 A 2168 U 2170 cWW ntSH
204 HL_8CRE_045 8CRE 0.2031 1 GNRA 1 LSU rRNA A 2142 G 2143 A 2144 A 2145 A 2146 U 2148 cWW tSH
205 HL_5J7L_007 5J7L 0.1595 0 GNRA AA SSU rRNA U 296 G 297 A 298 G 299 A 300 G 301 cWW ntSH
206 HL_4LFB_007 4LFB 0.1890 0 GNRA A SSU rRNA U 296 G 297 A 298 G 299 A 300 G 301 cWW ntSH
207 HL_3RG5_007 3RG5 0.1713 0 GNRA B Selenocysteine transfer RNA U 47|||C U 47|||D A 47|||E G 47|||F C 47|||G G 47|||H cWW ntSHa
208 HL_6UFH_004 6UFH 0.2468 0 GNRA A RNA (167-MER) C 106 G 107 A 108 A 109 A 110 G 111 cWW
209 HL_8CRE_058 8CRE 0.1846 0 GNRA 1 LSU rRNA U 2716 G 2717 A 2718 A 2719 A 2720 G 2721 cWW
210 HL_8P9A_170 8P9A 0.2239 0 GNRA AR LSU rRNA U 2744 G 2745 A 2746 A 2747 A 2748 G 2749 cWW
211 HL_8P9A_128 8P9A 0.2139 0 GNRA AR LSU rRNA U 707 G 708 A 709 A 710 A 711 G 712 cWW
212 HL_8CRE_015 8CRE 0.2158 0 GNRA 1 LSU rRNA U 705 G 706 A 707 A 708 A 709 G 710 cWW
213 HL_9DFE_045 9DFE 0.2116 0 GNRA 1A LSU rRNA U 1864 G 1865 C 1866 A 1876 A 1877 G 1878 cWW
214 HL_4V9F_060 4V9F 0.1714 0 GNRA 0 LSU rRNA C 2411 G 2412 A 2413 A 2414 A 2415 G 2416 cWW
215 HL_2ZZM_003 2ZZM 0.1552 0 GNRA B tRNA C 47 G 47|||A U 47|||B A 47|||C G 47|||D G 47|||E cWW
216 HL_5B2T_001 5B2T 0.1284 0 GNRA A tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW
217 HL_6N2V_001 6N2V 0.1479 0 GNRA A X. oryzae Mn riboswitch optimized construct G 24 G 25 A 26 A 27 A 28 C 29 cWW
218 HL_5J7L_152 5J7L 0.1488 0 GNRA DA LSU rRNA G 629 G 630 A 631 A 632 A 633 C 634 cWW
219 HL_5F9F_003 5F9F 0.1556 0 GNRA F RNA (24-mer) A 10 G 11 U 12 G 13 A 14 U 15 cWW
220 HL_8CRE_011 8CRE 0.1043 0 GNRA 1 LSU rRNA U 382 G 383 A 384 A 385 A 386 A 387 cWW ntSH
221 HL_6JOO_001 6JOO 0.1049 0 GNRA B Guide RNA G 32 G 33 A 34 A 35 A 36 C 37 cWW ntSH
222 HL_6UFH_002 6UFH 0.1210 0 GNRA A RNA (167-MER) G 45 G 46 A 47 A 48 A 49 C 50 cWW ntSH
223 HL_8P9A_213 8P9A 0.1524 0 GNRA sR SSU rRNA A 1084 G 1085 A 1086 A 1087 A 1088 U 1089 cWW
224 HL_8CRE_214 8CRE 0.1679 0 GNRA CM SSU rRNA A 1069 G 1070 A 1071 A 1072 A 1073 U 1074 cWW
225 HL_3SUX_002 3SUX 0.1506 0 GNRA X THF riboswitch C 65 G 66 A 67 A 68 A 69 G 70 cWW
226 HL_8P9A_159 8P9A 0.1942 0 GNRA AR LSU rRNA A 2220 G 2221 A 2222 A 2223 A 2224 U 2225 cWW
227 HL_8CRE_046 8CRE 0.1720 0 GNRA 1 LSU rRNA A 2198 G 2199 A 2200 A 2201 A 2202 U 2203 cWW
228 HL_9E9Q_001 9E9Q 0.2004 0 A Sarbecovirus 5'UTR G 29 G 30 A 31 A 32 A 33 C 34 cWW
229 HL_6UFG_004 6UFG 0.1461 0 GNRA A RNA (166-MER) C 105 G 106 A 107 A 108 A 109 G 110 cWW ntSH
230 HL_6CU1_002 6CU1 0.2020 0 GNRA A Y RNA-like C 42 G 43 A 44 A 45 A 46 G 47 cWW
231 HL_8VU0_002 8VU0 0.1947 0 GNRA C tRNA C 33 G 34 A 35 A 36 A 37 G 38 cWW
232 HL_4PQV_001 4PQV 0.2435 0 GNRA A Flavivirus 3' UTR stem loop IV C 13 G 14 A 15 A 16 A 17 G 18 cWW
233 HL_3E5C_002 3E5C 0.2004 0 GNRA A SAM-III riboswitch aptamer (SMK box) C 41 G 42 A 43 A 44 A 45 G 46 cWW
234 HL_6CB3_005 6CB3 0.1915 0 GNRA B RNA (99-MER) G 50 G 51 A 52 A 53 A 54 C 55 cWW
235 HL_4OQU_001 4OQU 0.1797 0 GNRA A SAM-I-IV-variant G 13 G 14 A 15 G 16 A 17 C 18 ncWW
236 HL_1UN6_004 1UN6 0.1533 0 GNRA F 5S RIBOSOMAL RNA G 82 G 83 A 84 A 85 A 86 C 94 cWW ntSH
237 HL_8P9A_125 8P9A 0.1613 0 GNRA AR LSU rRNA C 599 G 600 U 601 A 602 A 603 G 604 cWW
238 HL_5DDO_003 5DDO 0.2130 0 GNRA with GA tSW pair B L-glutamine riboswitch (58-MER) G 11 G 12 A 13 A 14 A 15 C 16 cWW
239 HL_4WF9_054 4WF9 0.2055 0 GNRA X LSU rRNA C 2401 G 2402 A 2403 A 2404 A 2405 G 2406 cWW
240 HL_7A0S_057 7A0S 0.1844 0 GNRA X LSU rRNA G 2353 G 2354 A 2355 A 2356 A 2357 C 2358 cWW
241 HL_7A0S_020 7A0S 0.2102 0 GNRA X LSU rRNA C 640 G 641 A 642 A 643 A 644 G 645 cWW
242 HL_4QK9_001 4QK9 0.2782 0 GNRA variation A cyclic di-AMP riboswitch C 14 U 15 G 16 A 17 A 18 G 19 cWW
243 HL_7A0S_047 7A0S 0.1999 0 GNRA X LSU rRNA U 1856 G 1857 C 1858 A 1859 A 1860 G 1861 cWW
244 HL_7JNH_001 7JNH 0.2478 0 GNRA B Core double ENE RNA (Xtal construct) from Oryza sativa transposon C 43 G 44 A 45 A 46 A 47 G 48 cWW
245 HL_6CB3_006 6CB3 0.2373 0 GNRA B RNA (99-MER) C 76 G 77 A 78 A 79 A 80 G 81 cWW
246 HL_3NKB_002 3NKB 0.2469 0 GNRA B Hepatitis delta virus ribozyme C 49 G 50 A 51 A 52 A 53 G 54 cWW
247 HL_8P9A_142 8P9A 0.3057 0 GNRA AR LSU rRNA C 1403 G 1404 U 1405 A 1406 A 1407 G 1408 cWW
248 HL_8CRE_029 8CRE 0.3164 0 GNRA 1 LSU rRNA U 1399 G 1400 U 1401 A 1402 A 1403 A 1404 cWW
249 HL_8CRE_035 8CRE 0.3471 0 GNRA 1 LSU rRNA G 1630 G 1631 C 1632 A 1633 A 1634 C 1635 cWW
250 HL_8P9A_147 8P9A 0.3220 0 GNRA AR LSU rRNA G 1634 G 1635 U 1636 A 1637 A 1638 C 1639 cWW
251 HL_2BTE_003 2BTE 0.3248 0 GNRA B tRNA C 46 G 47 C 47|||A A 47|||B A 47|||C G 47|||D cWW
252 HL_4V9F_033 4V9F 0.3383 0 GNRA 0 LSU rRNA C 1326 G 1327 A 1328 G 1329 A 1330 G 1331 cWW
253 HL_4WF9_059 4WF9 0.2957 0 GNRA X LSU rRNA C 2621 G 2622 U 2623 G 2624 A 2625 G 2626 cWW
254 HL_9DFE_061 9DFE 0.2547 0 GNRA 1A LSU rRNA C 2594 G 2595 U 2596 G 2597 A 2598 G 2599 cWW ntSH
255 HL_7A0S_062 7A0S 0.2443 0 GNRA X LSU rRNA C 2573 G 2574 U 2575 G 2576 A 2577 G 2578 cWW
256 HL_5U3G_002 5U3G 0.2139 0 GNRA B Guanidine-I riboswitch C 47 G 48 A 49 A 50 A 51 G 52 cWW ntSH
257 HL_3W3S_003 3W3S 0.2714 0 GNRA B Selenocysteine transfer RNA C 47|||F G 47|||G C 47|||H A 47|||I A 47|||J G 47|||K cWW
258 HL_4LFB_024 4LFB 0.2834 0 GNRA A SSU rRNA C 1076 G 1077 U 1078 G 1079 A 1080 G 1081 cWW
259 HL_5J7L_023 5J7L 0.2876 0 GNRA AA SSU rRNA U 1076 G 1077 U 1078 G 1079 A 1080 A 1081 cWW
260 HL_5J7L_027 5J7L 0.2991 0 GNRA AA SSU rRNA C 1265 G 1266 C 1267 G 1268 A 1269 G 1270 cWW
261 HL_8P9A_217 8P9A 0.2826 0 GNRA sR SSU rRNA A 1296 G 1297 U 1298 G 1299 A 1300 U 1301 cWW
262 HL_8CRE_010 8CRE 0.2346 0 GNRA 1 LSU rRNA A 357 G 358 U 359 G 360 A 361 U 362 cWW
263 HL_8P9A_122 8P9A 0.2319 0 GNRA AR LSU rRNA A 357 G 358 U 359 G 360 A 361 U 362 cWW
264 HL_4V9F_015 4V9F 0.2309 0 GNRA 0 LSU rRNA U 468 G 469 U 470 G 471 A 472 A 473 cWW
265 HL_4WFL_003 4WFL 0.2196 0 GNRA A LSRP RNA G 81 G 82 U 83 A 84 A 85 C 86 cWW
266 HL_4YAZ_003 4YAZ 0.2444 0 GNRA R Cyclic di-GMP-I riboswitch C 25 G 26 C 27 G 28 A 29 G 30 cWW
267 HL_4V9F_017 4V9F 0.2551 0 GNRA 0 LSU rRNA C 576 G 577 C 578 G 579 A 580 G 581 cWW
268 HL_2Z75_004 2Z75 0.2682 0 GNRA B glmS ribozyme G 113 G 114 C 115 G 116 A 117 C 118 cWW
269 HL_3IGI_003 3IGI 0.2434 0 GNRA A Group II catalytic intron D1-D4-3 G 89 G 90 C 91 G 92 A 93 C 94 cWW
270 HL_4V9F_065 4V9F 0.2412 0 GNRA 0 LSU rRNA C 2629 G 2630 U 2631 G 2632 A 2633 G 2634 cWW
271 HL_7KKV_001 7KKV 0.2577 0 GNRA B OLE* RNA G 500 G 501 U 502 G 503 A 504 C 505 cWW
272 HL_9DFE_066 9DFE 0.2232 0 GNRA 1A LSU rRNA C 2856 G 2857 C 2858 G 2859 A 2860 G 2861 cWW
273 HL_5J7L_196 5J7L 0.2215 0 GNRA DA LSU rRNA C 2594 G 2595 U 2596 G 2597 A 2598 G 2599 cWW
274 HL_8CRE_218 8CRE 0.2392 0 GNRA CM SSU rRNA A 1281 G 1282 U 1283 G 1284 A 1285 U 1286 cWW
275 HL_8P9A_175 8P9A 0.2222 0 GNRA AR LSU rRNA C 2963 G 2964 U 2965 G 2966 A 2967 G 2968 cWW
276 HL_7A0S_015 7A0S 0.2305 0 GNRA X LSU rRNA C 473 G 474 U 475 G 476 A 477 G 478 cWW
277 HL_8CRE_063 8CRE 0.2152 0 GNRA 1 LSU rRNA C 2935 G 2936 U 2937 G 2938 A 2939 G 2940 cWW
278 HL_9DFE_030 9DFE 0.2360 0 GNRA 1A LSU rRNA C 1222 G 1223 C 1224 G 1225 A 1226 G 1227 cWW
279 HL_5J7L_147 5J7L 0.2053 0 GNRA DA LSU rRNA C 462 G 463 U 464 G 465 A 466 G 467 cWW
280 HL_9DFE_014 9DFE 0.1758 0 GNRA 1A LSU rRNA C 462 G 463 U 464 G 465 A 466 G 467 cWW
281 HL_9J4O_002 9J4O 0.1753 0 A tRNA G 47|||b G 47|||c U 47|||d G 47|||e A 47|||f C 47|||g cWW ntSH
282 HL_4WF9_015 4WF9 0.2139 0 GNRA X LSU rRNA C 508 G 509 U 510 G 511 A 512 G 513 cWW
283 HL_1U9S_004 1U9S 0.1698 0 GNRA A RNase P class A G 204 G 205 C 206 A 207 A 208 C 209 cWW ntSH
284 HL_5J7L_202 5J7L 0.1941 0 GNRA DA LSU rRNA A 2856 G 2857 C 2858 G 2859 A 2860 U 2861 cWW
285 HL_2NZ4_008 2NZ4 0.1988 0 GNRA Q glmS ribozyme G 108 G 109 U 110 G 111 A 112 C 113 cWW
286 HL_4LFB_028 4LFB 0.2202 0 GNRA A SSU rRNA G 1265 G 1266 C 1267 A 1268 A 1269 C 1270 cWW
287 HL_7A0S_068 7A0S 0.2066 0 GNRA X LSU rRNA A 2831 G 2832 C 2833 A 2834 A 2835 U 2836 cWW ntSH
288 HL_4WF9_020 4WF9 0.2155 0 GNRA X LSU rRNA C 674 G 675 A 676 A 677 A 678 G 679 cWW
289 HL_3NPQ_001 3NPQ 0.2357 0 GNRA A SAH (S-adenosyl-L-homocysteine) riboswitch aptamer C 20 G 21 A 22 G 23 A 24 G 25 cWW
290 HL_2OIU_003 2OIU 0.1853 0 GNRA P L1 Ribozyme RNA Ligase C 59 G 60 A 61 A 62 A 63 G 64 cWW
291 HL_7MKY_002 7MKY 0.1667 0 GNRA A RNA (66-MER) G 40 G 41 A 42 A 43 A 44 C 45 cWW
292 HL_6JQ5_002 6JQ5 0.1743 0 GNRA A Hatchet ribozyme C 45 G 46 A 47 A 48 A 49 G 50 cWW
293 HL_6U8D_002 6U8D 0.1505 0 GNRA A JIIIabc RNA (68-MER) G 180 G 198 A 199 A 200 A 201 C 219 cWW
294 HL_4QK9_002 4QK9 0.2049 0 GNRA A cyclic di-AMP riboswitch C 56 G 57 U 58 A 59 A 60 G 61 cWW
295 HL_5J7L_191 5J7L 0.1865 0 GNRA DA LSU rRNA C 2374 G 2375 A 2376 A 2377 A 2378 G 2379 cWW
296 HL_9DFE_018 9DFE 0.1674 0 GNRA 1A LSU rRNA G 629 G 630 A 631 A 632 A 633 C 634 cWW
297 HL_6DME_001 6DME 0.2060 0 GNRA A ppGpp Riboswitch C 25 G 26 A 27 G 28 A 29 G 30 cWW
298 HL_4WF9_065 4WF9 0.2689 0 GNRA X LSU rRNA G 2876 G 2877 U 2878 G 2879 A 2880 C 2881 cWW
299 HL_7MRL_002 7MRL 0.2270 0 GNRA A tRNA G 34 G 35 A 36 A 37 A 38 C 39 cWW
300 HL_359D_001 359D 0.1556 0 GNRA B RNA HAMMERHEAD RIBOZYME C 154 G 31|||L U 32|||L A 33|||L A 34|||L G 164 cWW
301 HL_4Y1M_004 4Y1M 0.1826 0 GNRA B E. coli yybP-ykoY riboswitch A 81 G 82 A 83 A 84 A 85 U 86 cWW ntSH
302 HL_4LVW_002 4LVW 0.2619 0 GNRA A THF riboswitch C 58 G 59 A 60 G 61 A 62 G 63 cWW
303 HL_7A0S_070 7A0S 0.2306 0 GNRA Y 5S rRNA C 88 G 89 C 90 A 91 G 92 G 93 cWW
304 HL_9DFE_069 9DFE 0.2584 0 GNRA 1B 5S rRNA G 86 G 87 C 88 G 89 A 90 C 91 cWW
305 HL_6MJ0_008 6MJ0 0.2514 0 GNRA with GA tSW pair B tRNA-like 3' UTR element C 49 G 50 A 51 A 52 A 53 G 54 cWW
306 HL_4OQU_004 4OQU 0.2312 0 GNRA A SAM-I-IV-variant C 76 G 77 A 78 G 79 A 80 G 81 cWW
307 HL_6SVS_001 6SVS 0.2418 0 GNRA A RNA (79-mer) C 26 G 27 A 28 A 29 A 30 G 31 cWW
308 HL_1G1X_003 1G1X 0.2489 0 GNRA E 16S RIBOSOMAL RNA C 726 G 727 A 728 A 729 G 730 G 731 cWW
309 HL_1G1X_005 1G1X 0.2419 0 GNRA J 16S RIBOSOMAL RNA C 726 G 727 A 728 A 729 G 730 G 731 cWW
310 HL_4LFB_016 4LFB 0.2421 0 GNRA A SSU rRNA C 726 G 727 A 728 A 729 G 730 G 731 cWW
311 HL_5J7L_016 5J7L 0.2332 0 GNRA AA SSU rRNA C 726 G 727 A 728 A 729 G 730 G 731 cWW
312 HL_8CRE_211 8CRE 0.2402 0 GNRA CM SSU rRNA C 922 G 923 A 924 A 925 A 926 G 927 cWW
313 HL_8P9A_210 8P9A 0.2258 0 GNRA sR SSU rRNA C 937 G 938 A 939 A 940 A 941 G 942 cWW
314 HL_6M0X_001 6M0X 0.1680 0 GNRA B RNA (71-MER) C 32 G 33 A 34 A 35 A 36 G 37 cWW
315 HL_7QQX_001 7QQX 0.2607 0 GNRA A tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW
316 HL_4V9F_028 4V9F 0.1736 1 GNRA 0 LSU rRNA G 1054 G 1055 U 1056 A 1057 A 1058 C 1060 cWW ntSH
317 HL_8P9A_137 8P9A 0.2053 1 GNRA AR LSU rRNA G 1126 G 1127 U 1128 A 1129 A 1130 C 1132 cWW ntSH
318 HL_8CRE_024 8CRE 0.2067 1 GNRA 1 LSU rRNA G 1122 G 1123 U 1124 A 1125 A 1126 C 1128 cWW ntSH
319 HL_4V9F_045 4V9F 0.2279 1 GNRA 0 LSU rRNA C 1793 G 1794 G 1795 A 1796 A 1797 G 1799 cWW
320 HL_7KKV_003 7KKV 0.2549 1 GNRA B OLE* RNA G 528 G 529 A 530 A 531 A 532 C 534 cWW
321 HL_7A0S_026 7A0S 0.1942 2 GNRA X LSU rRNA A 966 G 967 C 968 A 970 A 971 U 973 cWW ntSH
322 HL_9DFE_025 9DFE 0.1995 2 GNRA 1A LSU rRNA C 955 G 956 A 957 A 959 A 960 G 962 cWW ntSH
323 HL_4WF9_027 4WF9 0.2493 2 GNRA X LSU rRNA U 999 G 1000 A 1001 A 1003 A 1004 G 1006 cWW ntSH
324 HL_6UFG_005 6UFG 0.2819 0 GNRA A RNA (166-MER) C 144 G 145 A 146 A 147 A 148 G 149 cWW
325 HL_6JDV_001 6JDV 0.2479 0 GNRA B CRISPR RNA direct repeat element G 48 G 49 A 50 A 51 A 52 C 53 cWW
326 HL_4QLM_001 4QLM 0.2926 0 GNRA A cyclic di-AMP riboswitch C 54 G 55 A 56 A 57 A 58 G 59 cWW ntSH
327 HL_7A0S_005 7A0S 0.3026 0 GNRA X LSU rRNA C 146 G 147 C 148 A 149 A 150 G 151 cWW ntSH
328 HL_4KQY_002 4KQY 0.3308 0 GNRA A SAM-I riboswitch C 60 G 61 A 62 A 63 A 64 G 65 ncWW ntSH
329 HL_1G1X_004 1G1X 0.3337 0 GNRA I 16S RIBOSOMAL RNA C 590 G 591 A 592 A 593 A 594 G 649 cWW
330 HL_5J7L_211 5J7L 0.3829 2 GNRA DA LSU rRNA PSU 955 G 956 C 957 A 959 A 960 G 962 cWW ntSH
331 HL_4LFB_012 4LFB 0.4123 1 GNRA A SSU rRNA C 458 G 459 A 460 G 462 A 463 G 474 cWW tSH
332 HL_9DFE_041 9DFE 0.4981 1 GNRA 1A LSU rRNA U 1720 G 1721 A 1722 G 1740 A 1741 G 1742 ncWW
333 HL_5LM7_001 5LM7 0.2945 1 GNRA G RNA (29-MER) U 21 G 22 A 23 A 24 A 26 A 27 cWW ntSH
334 HL_3D0U_003 3D0U 0.3304 1 GNRA A Lysine riboswitch G 121 G 122 A 123 A 124 A 126 C 127 cWW tSH
335 HL_4AL5_001 4AL5 0.2789 1 GNRA B RNA (20-mer) C 10 G 11 U 12 A 13 A 15 G 16 cWW tSH
336 HL_2XLK_001 2XLK 0.2736 1 GNRA C RNA (16-mer) C 10 G 11 U 12 A 13 A 15 G 16 cWW tSH
337 HL_7WKP_001 7WKP 0.3210 1 GNRA B 3' stem loop crRNA C 10 G 11 C 12 A 13 A 15 G 16 cWW tSH
338 HL_5J7L_174 5J7L 0.3501 1 GNRA DA LSU rRNA A 1630 G 1631 A 1632 G 1633 A 1635 U 1636 cWW tSH
339 HL_5O6U_001 5O6U 0.2997 1 GNRA A crRNA C 32 G 33 C 34 A 35 A 37 G 38 cWW ntSH
340 HL_1XJR_001 1XJR 0.3993 1 GNRA A s2m RNA G 21 G 22 A 23 G 24 A 26 C 27 cWW tSH
341 HL_6VMY_001 6VMY 0.3969 1 GNRA A Cobalamin riboswitch U 223 G 224 A 225 A 226 A 228 A 229 cWW ntSH
342 HL_9DFE_019 9DFE 0.4306 1 GNRA 1A LSU rRNA C 641 G 642 A 643 A 644 A 646 G 647 cWW tSH
343 HL_8CRE_041 8CRE 0.5121 1 GNRA 1 LSU rRNA U 1858 U 1859 A 1860 A 1861 A 1863 G 1864 cWW ntSH
344 HL_8P9A_153 8P9A 0.5465 1 GNRA AR LSU rRNA U 1862 G 1863 A 1864 A 1865 A 1867 G 1868 cWW tSH
345 HL_4V9F_016 4V9F 0.4412 1 GNRA 0 LSU rRNA U 493 C 494 A 495 G 496 A 498 G 499 cWW ntSH
346 HL_4WF9_021 4WF9 0.4753 1 GNRA X LSU rRNA U 686 G 687 A 688 A 689 A 691 G 692 cWW ntSH
347 HL_4V9F_036 4V9F 0.4432 1 GNRA 0 LSU rRNA G 1468 C 1469 A 1470 A 1471 C 1472 C 1474 cWW tSHa
348 HL_7QR8_001 7QR8 0.5489 0 GNRA A tracrRNA A 32 G 33 A 34 A 35 A 36 U 37 cWW
349 HL_8CRE_193 8CRE 0.5145 1 GNRA related CM SSU rRNA G 152 U 153 A 154 A 155 U 156 C 158 cWW
350 HL_8P9A_192 8P9A 0.5726 1 GNRA related sR SSU rRNA G 154 U 155 A 156 A 157 U 158 C 160 cWW
351 HL_5J7L_180 5J7L 0.6086 0 GNRA variation DA LSU rRNA C 1868 G 1869 C 1870 A 1871 A 1872 G 1873 cWW
352 HL_1U9S_001 1U9S 0.6497 1 GNRA A RNase P class A G 84 U 85 A 86 A 87 C 88 C 90 cWW
