Motif HL_39334.4 Version HL_39334.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 5-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_024 | 4V9F | 0.2240 | 3 | 0 | LSU rRNA | U | 837 | C | 838 | C | 839 | A | 841 | C | 842 | A | 843 | A | 846 | cWW | tSW | cWS | |
| 2 | HL_7A0S_022 | 7A0S | 0.1373 | 3 | X | LSU rRNA | U | 757 | G | 758 | C | 759 | G | 761 | A | 762 | A | 763 | A | 766 | cWW | tSW | cWS | |
| 3 | HL_4WF9_023 | 4WF9 | 0.0000 | 3 | X | LSU rRNA | C | 789 | G | 790 | U | 791 | G | 793 | A | 794 | A | 795 | G | 798 | cWW | tSW | cWS | |
| 4 | HL_4Y4O_125 | 4Y4O | 0.2138 | 3 | 2A | LSU rRNA | G | 744 | G | 745 | A | 746 | G | 748 | C | 749 | A | 750 | C | 753 | cWW | tSW | cWS | |
| 5 | HL_5TBW_020 | 5TBW | 0.3160 | 3 | 1 | LSU rRNA | A | 876 | C | 877 | G | 878 | G | 880 | C | 881 | A | 882 | U | 885 | cWW | tSW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCUACAAUA | 1 |
| UGCUGAAACA | 1 |
| CGUUGAAAAG | 1 |
| GGAUGCAAAC | 1 |
| ACGUGCAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUACAAU | 1 |
| GCUGAAAC | 1 |
| GUUGAAAA | 1 |
| GAUGCAAA | 1 |
| CGUGCAAA | 1 |
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