Motif HL_39778.2 Version HL_39778.2 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RUM_001 | 4RUM | 0.6068 | 1 | A | NiCo riboswitch RNA | C | 27 | A | 28 | G | 29 | G | 31 | C | 32 | G | 33 | cWW | |
| 2 | HL_4XWF_001 | 4XWF | 0.4718 | 0 | A | ZMP/ZTP riboswitch | G | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW | |
| 3 | HL_3ADD_003 | 3ADD | 0.0000 | 0 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | A | 47|||F | G | 47|||G | U | 47|||H | G | 47|||I | cWW | |
| 4 | HL_2OEU_002 | 2OEU | 0.5658 | 2 | A | Hammerhead Ribozyme | C | 25 | C | 26 | A | 27 | U | 30 | A | 31 | G | 32 | cWW | |
| 5 | HL_4KR9_002 | 4KR9 | 0.6646 | 0 | M | RNA (39-MER) | G | 19 | G | 20 | A | 21 | A | 22 | A | 23 | C | 24 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAC | 2 |
| CAGAGCG | 1 |
| CGAGUG | 1 |
| CCAAAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| AGAGC | 1 |
| GAGU | 1 |
| CAAAUA | 1 |
Coloring options: