Motif HL_42355.1 Version HL_42355.1 of this group appears in releases 3.84 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 3-7 | 3-8 | 4-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4GCW_001 | 4GCW | 0.6793 | 5 | B | TRNA(THR) | C | 11 | U | 12 | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | A | 23 | G | 24 | cWW | ncWW | ncWW | ncWW | ncWS | ||
2 | HL_4V87_106 | 4V87 | 0.3930 | 6 | BB | TRNA-LEU | U | 11 | G | 12 | G | 13 | A | 14 | A | 15 | A | 21 | A | 23 | C | 24 | A | 25 | cWW | ncWW | ncWW | ||||
3 | HL_4WSM_208 | 4WSM | 0.0000 | 6 | 1K | tRNA | U | 11 | G | 12 | G | 13 | A | 14 | A | 15 | A | 21 | A | 23 | C | 24 | A | 25 | cWW | ncWW | ntSH | ncSW | |||
4 | HL_7KJT_001 | 7KJT | 0.5681 | 5 | A | tRNA | U | 11 | C | 12 | A | 13 | G | 14 | U | 15 | A | 21 | G | 22 | A | 23 | G | 24 | cWW | ntWW | ncWW | ncWS | |||
5 | HL_4V9I_038 | 4V9I | 0.5850 | 5 | AY | tRNA | C | 11 | G | 12 | G | 13 | A | 14 | G | 15 | G | 21 | A | 22 | A | 23 | G | 24 | cWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGGAAUUGGUAGACA | 2 |
CUCAGCAGGUAGAG | 1 |
UCAGUCUGGCAGAG | 1 |
CGGAGCGGCUGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGAAUUGGUAGAC | 2 |
UCAGCAGGUAGA | 1 |
CAGUCUGGCAGA | 1 |
GGAGCGGCUGAA | 1 |
- Annotations
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.35 | Avg 0.43 | Max 0.69
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