#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6 7 8 9 101-102-9
1 HL_3T4B_0033T4B0.54590AHCV IRES pseudoknot domain plus crystallization moduleC304U305U306G307C308G309A310G311U312G313cWWncWw
2 HL_2JLT_0012JLT0.49580AR06G5G6U7C8C9C10A11G12A13C14cWWcWW
3 HL_1VW3_0471VW30.48070A21S ribosomal RNAA2589U2590A2591U2592A2593A2594U2595G2596G2597U2598cWWncWW
4 HL_4W21_0604W210.00001528S ribosomal RNAU4352U4353G4355G4356G4357U4358U4359U4360U4361A4362ncWWncwW
5 HL_2A64_0062A640.52952Aribonuclease P RNAC313G314G317C318A319U320G321C322A323G324cWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
CUUGCGAGUG1
GGUCCCAGAC1
AUAUAAUGGU1
UUUGGGUUUUA1
CGGCGCAUGCAG1
Non-Watson-Crick part of the motif
SequenceCounts
UUGCGAGU1
GUCCCAGA1
UAUAAUGG1
UUGGGUUUU1
GGCGCAUGCA1

Release history

Release1.18
Date2014-10-09
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in HL_43357.3Only in the parent motif
HL_43357.2
Compare
HL_2JLT_001, HL_1VW3_047, HL_2A64_006, HL_3T4B_003HL_4W21_060

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-cWW-R-R-R-R-R
    Heat map statistics
    Min 0.45 | Avg 0.50 | Max 0.89
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