Motif HL_44439.1 Version HL_44439.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_7KGA_001 | 7KGA | 0.4794 | 1 | A | Flavivirus DB element | U | 22 | C | 23 | A | 24 | G | 26 | C | 27 | C | 28 | U | 29 | A | 30 | G | 31 | cWW | ncWW | |
2 | HL_2IY5_002 | 2IY5 | 0.4237 | 0 | tRNA anticodon loop | T | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWB |
3 | HL_2ZNI_002 | 2ZNI | 0.0000 | 0 | C | bacterial tRNA | A | 31 | C | 32 | U | 33 | C | 34 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW | |
4 | HL_1FIR_005 | 1FIR | 0.3941 | 0 | A | tRNA | A | 31 | C | 32 | U | 33 | 70U | 34 | U | 35 | U | 36 | 12A | 37 | A | 38 | PSU | 39 | cWW | ncWB |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCAAGCCUAG | 1 |
ACUGAAAAU | 1 |
ACUCUAAAU | 1 |
ACU(70U)UU(12A)A(PSU) | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CAAGCCUA | 1 |
CUGAAAA | 1 |
CUCUAAA | 1 |
CU(70U)UU(12A)A | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- tRNA anticodon loop (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.39 | Avg 0.34 | Max 0.53
Coloring options: