Motif HL_45175.1 Version HL_45175.1 of this group appears in releases 3.89 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5WWT_001 | 5WWT | 0.4967 | 3 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | G | 16 | A | 21 | G | 22 | cWW | |
| 2 | HL_3EPH_001 | 3EPH | 0.2186 | 3 | tRNA D-loop | E | tRNA | C | 13 | A | 14 | G | 15 | U | 16 | A | 21 | G | 22 | cWW | cWS |
| 3 | HL_3TUP_001 | 3TUP | 0.0000 | 4 | tRNA D-loop | T | tRNA | C | 13 | A | 14 | G | 15 | U | 16 | A | 21 | G | 22 | cWW | ncWS |
| 4 | HL_3FOZ_004 | 3FOZ | 0.1305 | 4 | tRNA D-loop | D | tRNA | C | 13 | A | 14 | G | 15 | U | 16 | A | 21 | G | 22 | cWW | cWS |
| 5 | HL_1IL2_007 | 1IL2 | 0.4971 | 4 | tRNA D-loop | C | tRNA | PSU | 913 | A | 914 | A | 915 | H2U | 916 | A | 921 | G | 922 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGGGGUAG | 1 |
| CAGUGGUAG | 1 |
| CAGUUGGUAG | 1 |
| CAGUCGGUAG | 1 |
| (PSU)AA(H2U)GG(H2U)CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGGGUA | 1 |
| AGUGGUA | 1 |
| AGUUGGUA | 1 |
| AGUCGGUA | 1 |
| AA(H2U)GG(H2U)CA | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (5)
- Basepair signature
- cWW-cWS-F-F
- Heat map statistics
- Min 0.13 | Avg 0.34 | Max 0.67
Coloring options: