Motif HL_46211.1 Version HL_46211.1 of this group appears in releases 4.7 to 4.9
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | 3-5 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5H9F_001 | 5H9F | 0.4468 | 1 | L | crRNA (61-MER) | G | 50 | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | C | 57 | cWW | ncWw | |||
| 2 | HL_9E6Q_025 | 9E6Q | 0.0762 | 2 | 1 | LSU rRNA | G | 896 | C | 897 | A | 898 | A | 900 | A | 901 | A | 903 | C | 904 | cWW | cWW | tSW | ||
| 3 | HL_8GLP_024 | 8GLP | 0.0000 | 2 | L5 | LSU rRNA | G | 1627 | C | 1628 | G | 1629 | A | 1631 | A | 1632 | A | 1634 | C | 1635 | cWW | cWW | tSW | ||
| 4 | HL_9H3G_027 | 9H3G | 0.0311 | 2 | A | LSU rRNA | G | 919 | C | 920 | G | 921 | A | 923 | A | 924 | A | 926 | C | 927 | cWW | cWW | tSW | ||
| 5 | HL_9AXU_019 | 9AXU | 0.0410 | 2 | 2 | LSU rRNA | G | 942 | C | 943 | G | 944 | A | 946 | A | 947 | A | 949 | C | 950 | cWW | cWW | tSW | ||
| 6 | HL_8P9A_133 | 8P9A | 0.0649 | 2 | AR | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW | ||
| 7 | HL_8OI5_020 | 8OI5 | 0.0635 | 2 | 1 | LSU rRNA | G | 906 | C | 907 | G | 908 | A | 910 | A | 911 | A | 913 | C | 914 | cWW | cWW | tSW | ||
| 8 | HL_6CF2_001 | 6CF2 | 0.2291 | 1 | G | RNA (35-MER) | A | 13 | C | 14 | U | 15 | C | 17 | G | 18 | G | 19 | U | 20 | cWW | ||||
| 9 | HL_9H3G_038 | 9H3G | 0.5054 | 0 | A | LSU rRNA | G | 1571 | C | 1572 | U | 1573 | U | 1574 | A | 1575 | A | 1576 | C | 1577 | cWW | cWW | |||
| 10 | HL_4WZD_250 | 4WZD | 0.6778 | 0 | 3L | tRNA | U | 47||||P_1 | C | 48||||P_1 | A | 49||||P_1 | U | 50||||P_1 | C | 51||||P_1 | G | 52||||P_1 | A | 53||||P_1 | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAAGAC | 5 |
| GCGCCAGC | 1 |
| GCAAAA(OMG)AC | 1 |
| ACUUCGGU | 1 |
| GCUUAAC | 1 |
| UCAUCGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAAAGA | 5 |
| CGCCAG | 1 |
| CAAAA(OMG)A | 1 |
| CUUCGG | 1 |
| CUUAA | 1 |
| CAUCG | 1 |
- Annotations
-
- (10)
- Basepair signature
- cWW-cWW-tSW-F
- Heat map statistics
- Min 0.03 | Avg 0.33 | Max 0.80
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