Motif HL_46333.1 Version HL_46333.1 of this group appears in releases 4.1 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6UFH_003 | 6UFH | 0.5793 | 1 | Pseudoknot geometry | A | RNA (167-MER) | G | 70 | U | 72 | U | 73 | G | 74 | G | 75 | C | 76 | C | 77 | cWW | ||
| 2 | HL_5VPO_138 | 5VPO | 0.5399 | 1 | Pseudoknot geometry | XV | P-site ASL SufA6 | U | 32 | U | 33 | C | 34 | G | 35 | G | 36 | 1MG | 37 | A | 39 | ncWW | ||
| 3 | HL_3LA5_002 | 3LA5 | 0.1521 | 1 | Purine riboswitch | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 4 | HL_9IWF_005 | 9IWF | 0.1442 | 1 | Purine riboswitch | B | Purine riboswitch | G | 32 | U | 33 | U | 35 | C | 36 | G | 37 | A | 38 | C | 39 | cWW | tWW | |
| 5 | HL_3RKF_008 | 3RKF | 0.1179 | 1 | Purine riboswitch | C | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 6 | HL_4FEN_002 | 4FEN | 0.0725 | 1 | Purine riboswitch | B | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 7 | HL_1Y27_002 | 1Y27 | 0.0806 | 1 | Purine riboswitch | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ||
| 8 | HL_1Y26_002 | 1Y26 | 0.0634 | 1 | Purine riboswitch | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 9 | HL_4XNR_002 | 4XNR | 0.0000 | 1 | Purine riboswitch | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 10 | HL_4LX6_002 | 4LX6 | 0.1037 | 1 | Purine riboswitch | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 11 | HL_7TZS_001 | 7TZS | 0.4990 | 0 | X | TPP riboswitch (THI element) | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 5 |
| GCUUCCAC | 2 |
| GGUUGGCC | 1 |
| UUCGGGA | 1 |
| GUUUCGAC | 1 |
| CUGCGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 5 |
| CUUCCA | 2 |
| GUUGGC | 1 |
| UCGG(1MG)G | 1 |
| UUUCGA | 1 |
| UGCGU | 1 |
- Annotations
-
- Purine riboswitch (8)
- Pseudoknot geometry (2)
- (1)
- Basepair signature
- cWW-R-cSH
- Heat map statistics
- Min 0.06 | Avg 0.31 | Max 0.98
Coloring options: