Motif HL_49678.2 Version HL_49678.2 of this group appears in releases 3.85 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5SWD_005 | 5SWD | 0.1291 | 3 | Mini UNCG | B | Purine riboswitch | U | 47 | C | 50 | A | 52 | cWW |
| 2 | HL_3SNP_002 | 3SNP | 0.0000 | 2 | D | ferritin H IRE RNA | C | 14 | U | 17 | G | 18 | cWW | |
| 3 | HL_7EU9_001 | 7EU9 | 0.1047 | 2 | B | RNA (43-MER) | C | 12 | C | 15 | G | 16 | cWW | |
| 4 | HL_7D3J_001 | 7D3J | 0.0924 | 2 | B | RNA (43-MER) | C | 12 | C | 15 | G | 16 | cWW | |
| 5 | HL_3SN2_001 | 3SN2 | 0.0895 | 2 | B | transferrin receptor iron regulatory element B RNA | C | 14 | U | 17 | G | 18 | cWW | |
| 6 | HL_4V9F_041 | 4V9F | 0.1524 | 2 | Mini UNCG | 0 | LSU rRNA | C | 1651 | U | 1654 | G | 1655 | cWW |
| 7 | HL_6LTU_001 | 6LTU | 0.1150 | 2 | B | RNA (56-mer) | U | 12 | C | 15 | A | 16 | cWW | |
| 8 | HL_8C3A_040 | 8C3A | 0.1567 | 2 | Mini UNCG (H) | 1 | LSU rRNA | C | 1788 | U | 1791 | G | 1792 | cWW |
| 9 | HL_8KAL_002 | 8KAL | 0.9546 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 10 | HL_5CCB_002 | 5CCB | 2.5382 | 2 | N | tRNA | U | 33 | U | 35 | A | 37 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUG | 2 |
| CAUCG | 2 |
| UUUCUA | 1 |
| CCAUG | 1 |
| UUUCA | 1 |
| CCUUG | 1 |
| CUAG | 1 |
| UUUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGU | 2 |
| AUC | 2 |
| UUCU | 1 |
| CAU | 1 |
| UUC | 1 |
| CUU | 1 |
| UA | 1 |
| UUU | 1 |
- Annotations
-
- (6)
- Mini UNCG (3)
- Mini UNCG (H) (1)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.07 | Avg 0.57 | Max 2.82
Coloring options: