Motif HL_50588.1 Version HL_50588.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-13 | 4-14 | 5-11 | 6-10 | 13-15 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6XKO_001 | 6XKO | 0.0000 | 0 | A | PreQ1-III riboswitch | C | 4 | A | 5 | A | 6 | C | 7 | U | 8 | U | 9 | A | 10 | G | 11 | G | 12 | A | 13 | U | 14 | U | 15 | U | 16 | U | 17 | A | 18 | G | 19 | G | 20 | cWW | cWW | |||||
| 2 | HL_7A0S_074 | 7A0S | 0.9440 | 0 | X | LSU rRNA | G | 2724 | C | 2725 | U | 2726 | G | 2727 | A | 2728 | A | 2729 | A | 2730 | G | 2731 | C | 2732 | A | 2733 | U | 2734 | C | 2735 | U | 2736 | A | 2737 | A | 2738 | G | 2739 | C | 2740 | cWW | ncWW | tWH | tSH | tHW | ntHW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAACUUAGGAUUUUAGG | 1 |
| GCUGAAAGCAUCUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUUAGGAUUUUAG | 1 |
| CUGAAAGCAUCUAAG | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: