Motif HL_50779.4 Version HL_50779.4 of this group appears in releases 3.96 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_215 | 8P9A | 0.2408 | 1 | sR | SSU rRNA | G | 1188 | A | 1189 | C | 1190 | U | 1191 | C | 1192 | A | 1193 | A | 1194 | C | 1195 | C | 1197 | cWW |
| 2 | HL_8CRE_216 | 8CRE | 0.2179 | 1 | CM | SSU rRNA | G | 1173 | A | 1174 | C | 1175 | U | 1176 | C | 1177 | A | 1178 | A | 1179 | C | 1180 | C | 1182 | cWW |
| 3 | HL_4LFB_021 | 4LFB | 0.0000 | 1 | A | SSU rRNA | G | 963 | A | 964 | A | 965 | M2G | 966 | 5MC | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW |
| 4 | HL_5J7L_021 | 5J7L | 0.1220 | 1 | AA | SSU rRNA | G | 963 | A | 964 | U | 965 | 2MG | 966 | 5MC | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUCAACAC | 2 |
| GAA(M2G)(5MC)AACGC | 1 |
| GAUAACGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUCAACA | 2 |
| AA(M2G)(5MC)AACG | 1 |
| AU(2MG)(5MC)AACG | 1 |
Release history
| Release | 3.96 |
|---|---|
| Date | 2025-04-23 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.15 | Max 0.25
Coloring options: