Motif HL_50902.1 Version HL_50902.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_6UFG_006 | 6UFG | 0.2479 | 7 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | G | 15 | G | 23 | cWW |
2 | HL_5WWT_001 | 5WWT | 0.2077 | 5 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | G | 22 | cWW |
3 | HL_1GAX_004 | 1GAX | 0.2165 | 5 | tRNA D-loop | D | TRNA(VAL) | C | 913 | A | 914 | G | 915 | G | 921 | cWW |
4 | HL_5WT1_001 | 5WT1 | 0.1424 | 7 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | G | 22 | cWW |
5 | HL_2CSX_001 | 2CSX | 0.0000 | 7 | tRNA D-loop | C | RNA (75-MER) | C | 13 | A | 14 | G | 15 | G | 22 | cWW |
6 | HL_7OSM_115 | 7OSM | 0.3420 | 6 | tRNA D-loop | ASIT | tRNA | C | 13 | A | 14 | G | 15 | G | 22 | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAGGCGGUUAG | 1 |
CAGGGGUAG | 1 |
CAGCGGAAG | 1 |
CAGCCUGGGAG | 1 |
CAGCUGGUCAG | 1 |
CAGUCGGUAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AGGCGGUUA | 1 |
AGGGGUA | 1 |
AGCGGAA | 1 |
AGCCUGGGA | 1 |
AGCUGGUCA | 1 |
AGUCGGUA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (6)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.14 | Avg 0.31 | Max 1.00
Coloring options: