Motif HL_51876.1 Version HL_51876.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 7-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WT8_215 | 4WT8 | 0.4535 | 3 | D4 | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 18 | A | 22 | G | 23 | cWW | ncWS | ||
| 2 | HL_4V9Q_213 | 4V9Q | 0.0000 | 3 | DV | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | ncSH | ||
| 3 | HL_6CFJ_106 | 6CFJ | 0.2608 | 3 | 1x | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | cWS | ||
| 4 | HL_4TUE_033 | 4TUE | 0.3013 | 3 | QV | tRNA | C | 12 | A | 13 | G | 14 | C | 15 | C | 16 | U | 17 | A | 21 | G | 22 | cWW | cWS | ||
| 5 | HL_2ZUE_001 | 2ZUE | 0.3177 | 4 | B | tRNA-Arg | U | 913 | A | 914 | G | 915 | C | 916 | C | 917 | A | 917|||A | A | 921 | G | 922 | cWW | cWS | ||
| 6 | HL_5WT1_001 | 5WT1 | 0.4110 | 3 | C | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCUGGUAG | 4 |
| UAGCCAGGACAG | 1 |
| CAGCCUGGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCUGGUA | 4 |
| AGCCAGGACA | 1 |
| AGCCUGGGA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWS-R-R-R-R
- Heat map statistics
- Min 0.26 | Avg 0.34 | Max 0.62
Coloring options: