Motif HL_53760.2 Version HL_53760.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4R4V_007 | 4R4V | 0.7353 | 1 | A | VS ribozyme RNA | G | 689||||7_556 | U | 690||||7_556 | U | 691||||7_556 | G | 692||||7_556 | A | 693||||7_556 | C | 694||||7_556 | A | 696||||7_556 | C | 697||||7_556 | cWW | ||
| 2 | HL_4R4V_003 | 4R4V | 0.7353 | 1 | A | VS ribozyme RNA | G | 689 | U | 690 | U | 691 | G | 692 | A | 693 | C | 694 | A | 696 | C | 697 | cWW | ||
| 3 | HL_5TBW_050 | 5TBW | 0.3908 | 1 | 1 | LSU rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | ||
| 4 | HL_7A0S_048 | 7A0S | 0.1389 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB | |
| 5 | HL_4WF9_046 | 4WF9 | 0.1223 | 1 | X | LSU rRNA | G | 1976 | G | 1977 | U | 1978 | A | 1979 | A | 1980 | G | 1981 | U | 1983 | C | 1984 | cWW | ncWB | |
| 6 | HL_5J7L_182 | 5J7L | 0.0805 | 1 | DA | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB | |
| 7 | HL_4Y4O_151 | 4Y4O | 0.0000 | 1 | 2A | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ||
| 8 | HL_4V9F_051 | 4V9F | 0.2103 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW | ||
| 9 | HL_4V9F_049 | 4V9F | 0.8483 | 0 | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | A | 1919 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH | |
| 10 | HL_4V9F_038 | 4V9F | 0.9000 | 0 | 0 | LSU rRNA | G | 1557 | C | 1558 | A | 1559 | U | 1560 | U | 1561 | C | 1562 | G | 1563 | C | 1564 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAGUUC | 4 |
| GUUGACUAC | 2 |
| UCUAAUUAG | 1 |
| CAUCAGUAG | 1 |
| CGUACAAG | 1 |
| GCAUUCGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAGUU | 4 |
| UUGACUA | 2 |
| CUAAUUA | 1 |
| AUCAGUA | 1 |
| GUACAA | 1 |
| CAUUCG | 1 |
- Annotations
- Basepair signature
- cWW-bif-R-tSH-R
- Heat map statistics
- Min 0.08 | Avg 0.55 | Max 1.00
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