Motif HL_56824.3 Version HL_56824.3 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_046 | 1S72 | 0.7609 | 0 | 0 | LSU rRNA | C | 1808 | G | 1809 | C | 1810 | A | 1811 | G | 1812 | cWW |
| 2 | HL_4NVV_042 | 4NVV | 0.7599 | 0 | A | 23S Ribosomal RNA | C | 1783 | G | 1784 | C | 1785 | A | 1786 | G | 1787 | cWW |
| 3 | HL_4IOA_043 | 4IOA | 0.7277 | 0 | X | LSU rRNA | C | 1743 | G | 1744 | C | 1745 | A | 1746 | G | 1747 | cWW |
| 4 | HL_2QBG_046 | 2QBG | 0.7093 | 0 | B | 23S rRNA | C | 1752 | G | 1753 | A | 1754 | A | 1755 | G | 1756 | cWW |
| 5 | HL_2QBG_042 | 2QBG | 0.1757 | 3 | B | 23S rRNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 6 | HL_4NVV_038 | 4NVV | 0.1628 | 3 | A | 23S Ribosomal RNA | C | 1658 | G | 1659 | C | 1661 | C | 1663 | G | 1665 | cWW |
| 7 | HL_1VW3_029 | 1VW3 | 0.1409 | 3 | A | 21S ribosomal RNA | C | 1564 | G | 1565 | C | 1567 | C | 1569 | G | 1571 | cWW |
| 8 | HL_4IOA_039 | 4IOA | 0.1328 | 3 | X | LSU rRNA | C | 1628 | G | 1629 | C | 1631 | C | 1633 | G | 1635 | cWW |
| 9 | HL_1S72_042 | 1S72 | 0.0000 | 3 | 0 | LSU rRNA | C | 1687 | G | 1688 | C | 1690 | C | 1692 | G | 1694 | cWW |
| 10 | HL_4A1B_040 | 4A1B | 0.1086 | 3 | 1 | 26S RRNA | C | 1868 | G | 1869 | A | 1871 | C | 1873 | G | 1875 | cWW |
| 11 | HL_3U5H_041 | 3U5H | 0.1266 | 3 | 5 | 25S rRNA | C | 1844 | G | 1845 | A | 1847 | C | 1849 | G | 1851 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACACAG | 4 |
| CGCAG | 3 |
| CGAAG | 1 |
| CGACUCAG | 1 |
| CGCAUCAG | 1 |
| CGCAGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACACA | 4 |
| GCA | 3 |
| GAA | 1 |
| GACUCA | 1 |
| GCAUCA | 1 |
| GCAGCA | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_56824.3 | Only in the parent motif |
|---|---|---|---|
| HL_56824.2 Compare | HL_1S72_042, HL_4IOA_043, HL_1S72_046, HL_2QBG_042, HL_4A1B_040, HL_3U5H_041, HL_4IOA_039, HL_2QBG_046 | HL_4NVV_042, HL_4NVV_038, HL_1VW3_029 | HL_3V2F_042, HL_3V2F_038 |
Children motifs
| Child motif | Common motif instances | Only in HL_56824.3 | Only in the child motif |
|---|---|---|---|
| HL_56824.4 Compare | HL_1S72_042, HL_4IOA_043, HL_1S72_046, HL_2QBG_042, HL_4NVV_038, HL_4NVV_042, HL_4A1B_040, HL_3U5H_041, HL_4IOA_039, HL_1VW3_029, HL_2QBG_046 | HL_4CUV_041 |
Coloring options: