Motif HL_57065.2 Version HL_57065.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4C9D_002 | 4C9D | 0.3955 | 0 | D | R3 REPEAT RNA CLEAVAGE PRODUCT | C | 21 | G | 22 | U | 23 | A | 24 | G | 25 | ncWW | ||
| 2 | HL_4IOA_007 | 4IOA | 0.2573 | 1 | X | LSU rRNA | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW | ||
| 3 | HL_4Y4O_109 | 4Y4O | 0.0000 | 1 | 2A | LSU rRNA | A | 225 | G | 226 | A | 227 | A | 228 | U | 230 | cWW | ntSH | |
| 4 | HL_4V5O_039 | 4V5O | 0.5295 | 1 | BA | SSU rRNA | C | 185 | C | 186 | U | 187 | G | 188 | G | 190 | cWW | ||
| 5 | HL_5TBW_075 | 5TBW | 0.5814 | 2 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW | ||
| 6 | HL_4V8P_080 | 4V8P | 0.5458 | 2 | C2 | 5.8S rRNA | C | 109 | A | 110 | A | 111 | U | 113 | G | 115 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAG | 1 |
| AGAAUU | 1 |
| AGAAAU | 1 |
| CCUGCG | 1 |
| CACAUUG | 1 |
| CAAGUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA | 1 |
| GAAU | 1 |
| GAAA | 1 |
| CUGC | 1 |
| ACAUU | 1 |
| AAGUG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
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