Motif HL_57684.1 Version HL_57684.1 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3WQY_001 | 3WQY | 0.5961 | 5 | tRNA D-loop | C | tRNA | C | 1613 | A | 1614 | G | 1615 | G | 1622 | cWW |
| 2 | HL_4RDX_001 | 4RDX | 0.4895 | 7 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | G | 22 | cWW |
| 3 | HL_2ZZN_004 | 2ZZN | 0.0000 | 5 | tRNA D-loop | D | tRNA | U | 13 | A | 14 | G | 15 | A | 22 | cWW |
| 4 | HL_5X6B_005 | 5X6B | 0.2718 | 5 | P | tRNA | U | 13 | A | 14 | G | 15 | A | 21 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGGGGCUA | 2 |
| CAGCGGGAG | 1 |
| CAGCUGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGGGCU | 2 |
| AGCGGGA | 1 |
| AGCUGGUUA | 1 |
- Annotations
-
- tRNA D-loop (3)
- (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.27 | Avg 0.39 | Max 0.68
Coloring options: