#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_7Z4D_0037Z4D0.43840AsgRNAU72G73A74A75A76A77cWW
2 HL_4V9F_0224V9F0.46670GNRA0 LSU rRNAU733U734C735A736A737G738cWW
3 HL_8DP3_0038DP30.43180RRNA (90-MER)U62C63A64C65C66G67cWW
4 HL_4LFB_0024LFB0.50051A SSU rRNAG80U81U83U84A88C89cWW
5 HL_4QLM_0014QLM0.40940GNRAA cyclic di-AMP riboswitchC54G55A56A57A58G59cWWntSH
6 HL_7A0S_0057A0S0.31620GNRAX LSU rRNAC146G147C148A149A150G151cWWntSH
7 HL_3IGI_0043IGI0.29441AGroup IIC intronG135G136A137C139A140C141cWWntSH
8 HL_6ASO_0016ASO0.31521I U6 snRNAU70G71C72U74A75A76ncWWtSH
9 HL_4V9F_0364V9F0.31001GNRA variation0 LSU rRNAG1468C1469A1470A1471C1472C1474cWWtSHa
10 HL_4WF9_0214WF90.31651GNRA with one bulged baseX LSU rRNAU686G687A688A689A691G692cWWntSH
11 HL_8VTW_0208VTW0.282911A LSU rRNAC641G642A643A644A646G647cWWntSH
12 HL_5O7H_0015O7H0.21031GNRA with one bulged baseAcrRNAC32G33C34A35A37G38cWWntSH
13 HL_6VMY_0016VMY0.22261ACobalamin riboswitchU223G224A225A226A228A229cWWntSH
14 HL_1XJR_0011XJR0.20061GNRA with one bulged baseAs2m RNAG21G22A23G24A26C27cWWtSH
15 HL_5TBW_0425TBW0.31791GNRA with one bulged base1 LSU rRNAU1862G1863A1864A1865A1867G1868cWWtSH
16 HL_8C3A_0428C3A0.29261GNRA with one bulged base (H)1 LSU rRNAU1858U1859A1860A1861A1863G1864cWWntSH
17 HL_4V9F_0164V9F0.23421GNRA with one bulged base0 LSU rRNAU493C494A495G496A498G499cWWntSH
18 HL_3DIL_0033DIL0.19921ARNA (174-MER)G124G125A126A127A129C130cWWtSH
19 HL_5LM7_0015LM70.16151GNRA with one bulged baseGRNA (29-MER)U21G22A23A24A26A27cWWntSH
20 HL_3D0U_0033D0U0.15201GNRA with one bulged baseALysine Riboswitch RNAG121G122A123A124A126C127cWWtSH
21 HL_4AL5_0014AL50.10221GNRA with one bulged baseBRNA (20-mer)C10G11U12A13A15G16cWWtSH
22 HL_2XLK_0012XLK0.00001GNRA with one bulged baseCRNA (16-mer)C10G11U12A13A15G16cWWtSH
23 HL_7WKP_0017WKP0.08421B3' stem loop crRNAC10G11C12A13A15G16cWWtSH
24 HL_5J7L_1745J7L0.16531GNRA with one bulged baseDA LSU rRNAA1630G1631A1632G1633A1635U1636cWWtSH
25 HL_4LFB_0124LFB0.41701A SSU rRNAC458G459A460G462A463G474cWWtSH
26 HL_6CZR_0836CZR0.421411a SSU rRNAC453G454A455G457A458G459cWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
GGAAUAC2
CGUAUAG2
CGACGAG2
UGAAAA1
UUCAAG1
UCACCG1
GUUUUAC1
CGAAAG1
CGCAAG1
GGAACAC1
UGCAUAA1
GCAACUC1
UGAAUAG1
CGAACAG1
CGCACAG1
UGAACAA1
GGAGUAC1
UGAACAG1
UUAACAG1
UCAGAAG1
UGAAGAA1
CGCAUAG1
AGAGAAU1
Non-Watson-Crick part of the motif
SequenceCounts
GAACA4
GAAUA3
GAAA2
GCAUA2
GUAUA2
GACGA2
UCAA1
CACC1
UUUUA1
GCAA1
CAACU1
GCACA1
GAGUA1
UAACA1
CAGAA1
GAAGA1
GAGAA1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (11)
  • GNRA with one bulged base (10)
  • GNRA (3)
  • GNRA variation (1)
  • GNRA with one bulged base (H) (1)
  • Basepair signature
    cWW-tSH-F-F
    Heat map statistics
    Min 0.08 | Avg 0.37 | Max 0.86
    Help

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