Motif HL_59710.4 Version HL_59710.4 of this group appears in releases 3.25 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1J1U_005 | 1J1U | 0.5994 | 0 | tRNA anticodon loop | B | tRNA(Tyr) | A | 532||||4_556 | C | 533||||4_556 | U | 534||||4_556 | G | 535||||4_556 | U | 536||||4_556 | A | 537||||4_556 | G | 538||||4_556 | A | 539||||4_556 | U | 540||||4_556 | cWW | ncWW | |
| 2 | HL_1J1U_002 | 1J1U | 0.5994 | 0 | tRNA anticodon loop | B | tRNA(Tyr) | A | 532 | C | 533 | U | 534 | G | 535 | U | 536 | A | 537 | G | 538 | A | 539 | U | 540 | cWW | ncWW | |
| 3 | HL_2AKE_002 | 2AKE | 0.4339 | 0 | tRNA anticodon loop | B | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | C | 35 | A | 36 | G | 37 | A | 38 | U | 39 | cWW | ||
| 4 | HL_2AKE_005 | 2AKE | 0.4339 | 0 | tRNA anticodon loop | B | tRNA | A | 31||||7_556 | C | 32||||7_556 | U | 33||||7_556 | C | 34||||7_556 | C | 35||||7_556 | A | 36||||7_556 | G | 37||||7_556 | A | 38||||7_556 | U | 39||||7_556 | cWW | ||
| 5 | HL_1N78_002 | 1N78 | 0.3678 | 0 | tRNA anticodon loop | C | tRNA(Glu) | C | 531 | C | 532 | U | 533 | C | 534 | U | 535 | C | 536 | A | 537 | A | 538 | G | 539 | cWW | ncWW | |
| 6 | HL_3W3S_002 | 3W3S | 0.4085 | 0 | tRNA anticodon loop | B | Selenocysteine transfer RNA | A | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | |
| 7 | HL_3W3S_006 | 3W3S | 0.4085 | 0 | tRNA anticodon loop | B | Selenocysteine transfer RNA | A | 31||||43_455 | C | 32||||43_455 | U | 33||||43_455 | U | 34||||43_455 | C | 35||||43_455 | A | 36||||43_455 | A | 37||||43_455 | A | 38||||43_455 | U | 39||||43_455 | cWW | ncWW | |
| 8 | HL_4V90_033 | 4V90 | 0.3876 | 0 | tRNA anticodon loop | AV | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 9 | HL_5T83_002 | 5T83 | 0.3928 | 0 | Guanidine riboswitch aptamer P2 hairpin | A | Guanidine-I riboswitch | U | 56 | U | 57 | U | 58 | C | 59 | A | 60 | C | 61 | A | 62 | A | 63 | A | 64 | cWW | ntSHa | |
| 10 | HL_4V9K_034 | 4V9K | 0.2752 | 0 | tRNA anticodon loop | AW | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | |
| 11 | HL_4P95_002 | 4P95 | 0.2492 | 0 | Lariat-capping (LC) ribozyme DP2.1 hairpin | A | RNA (192-MER) | G | 241 | C | 242 | U | 243 | A | 244 | A | 245 | U | 246 | C | 247 | A | 248 | C | 249 | cWW | ||
| 12 | HL_4V9I_039 | 4V9I | 0.2511 | 0 | tRNA anticodon loop | AY | tRNA | U | 31 | C | 32 | U | 33 | C | 34 | G | 35 | A | 36 | A | 37 | A | 38 | A | 39 | cWW | ||
| 13 | HL_5IBB_210 | 5IBB | 0.2238 | 0 | tRNA anticodon loop | 1L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | A | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | ncWW | |
| 14 | HL_2AZX_008 | 2AZX | 0.1719 | 0 | tRNA anticodon loop | D | 72-MER | A | 531||||6_555 | C | 532||||6_555 | U | 533||||6_555 | C | 534||||6_555 | C | 535||||6_555 | A | 536||||6_555 | G | 537||||6_555 | A | 538||||6_555 | U | 539||||6_555 | cWW | ||
| 15 | HL_2AZX_005 | 2AZX | 0.1719 | 0 | tRNA anticodon loop | D | 72-MER | A | 531 | C | 532 | U | 533 | C | 534 | C | 535 | A | 536 | G | 537 | A | 538 | U | 539 | cWW | ||
| 16 | HL_4V50_137 | 4V50 | 0.1510 | 0 | tRNA anticodon loop | CW | PHE TRNA (UNMODIFIED BASES) | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ncWW | |
| 17 | HL_4WT8_216 | 4WT8 | 0.1757 | 0 | tRNA anticodon loop | D4 | tRNA | G | 32 | C | 33 | U | 34 | C | 35 | A | 36 | U | 37 | A | 38 | A | 39 | C | 40 | cWW | ||
| 18 | HL_4V9Q_214 | 4V9Q | 0.1161 | 0 | tRNA anticodon loop | DV | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 19 | HL_4TUE_034 | 4TUE | 0.0000 | 0 | tRNA anticodon loop | QV | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 20 | HL_4R4V_001 | 4R4V | 0.2643 | 0 | Varkud satellite (VS) ribozyme helix 1 | A | VS ribozyme RNA | C | 626 | G | 627 | U | 628 | C | 629 | G | 630 | U | 631 | C | 632 | G | 633 | G | 634 | cWW | tSH | |
| 21 | HL_4R4V_005 | 4R4V | 0.2643 | 0 | Varkud satellite (VS) ribozyme helix 1 | A | VS ribozyme RNA | C | 626||||7_556 | G | 627||||7_556 | U | 628||||7_556 | C | 629||||7_556 | G | 630||||7_556 | U | 631||||7_556 | C | 632||||7_556 | G | 633||||7_556 | G | 634||||7_556 | cWW | tSH | |
| 22 | HL_3TUP_002 | 3TUP | 0.3468 | 0 | tRNA anticodon loop | T | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 23 | HL_4YCO_002 | 4YCO | 0.2831 | 0 | tRNA anticodon loop | D | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 24 | HL_1U0B_002 | 1U0B | 0.3337 | 0 | tRNA anticodon loop | A | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 25 | HL_3WFS_002 | 3WFS | 0.3784 | 0 | tRNA anticodon loop | A | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | ncWW | ncWW | |
| 26 | HL_2IY5_002 | 2IY5 | 0.5173 | 0 | tRNA anticodon loop | T | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWB | |
| 27 | HL_2IY5_005 | 2IY5 | 0.5173 | 0 | tRNA anticodon loop | T | tRNA | A | 31||||4_555 | C | 32||||4_555 | U | 33||||4_555 | G | 34||||4_555 | A | 35||||4_555 | A | 36||||4_555 | A | 37||||4_555 | A | 38||||4_555 | U | 39||||4_555 | cWW | ncWB | |
| 28 | HL_4P5J_002 | 4P5J | 0.5884 | 0 | Turnip yellow mosaic virus TLS RNA anticodon loop | A | tRNA-like 3' UTR element | C | 25 | U | 26 | C | 27 | G | 28 | A | 29 | C | 30 | A | 31 | C | 32 | G | 33 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCCAGAU | 4 |
| GCUCAUAAC | 4 |
| ACUGAAAAU | 4 |
| ACUGUAGAU | 2 |
| ACUUCAAAU | 2 |
| AUUGAAAAU | 2 |
| CGUCGUCGG | 2 |
| CCUCUCAAG | 1 |
| UUUCACAAA | 1 |
| ACUCAUAAU | 1 |
| GCUAAUCAC | 1 |
| UCUCGAAAA | 1 |
| CCUUACAAG | 1 |
| AUUGCAAAU | 1 |
| CUCGACACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAUAA | 5 |
| CUCCAGA | 4 |
| CUGAAAA | 4 |
| CUGUAGA | 2 |
| CUUCAAA | 2 |
| UUGAAAA | 2 |
| GUCGUCG | 2 |
| CUCUCAA | 1 |
| UUCACAA | 1 |
| CUAAUCA | 1 |
| CUCGAAA | 1 |
| CUUACAA | 1 |
| UUGCAAA | 1 |
| UCGACAC | 1 |
Release history
| Release | 3.25 |
|---|---|
| Date | 2019-11-13 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA anticodon loop (23)
- Varkud satellite (VS) ribozyme helix 1 (2)
- Turnip yellow mosaic virus TLS RNA anticodon loop (1)
- Lariat-capping (LC) ribozyme DP2.1 hairpin (1)
- Guanidine riboswitch aptamer P2 hairpin (1)
- Basepair signature
- cWW-bif-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.44 | Max 0.78
Coloring options: