Motif HL_66621.1 Version HL_66621.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_039 | 4WF9 | 0.2272 | 1 | GNRA with extra cWW | X | LSU rRNA | A | 1673 | U | 1674 | G | 1675 | A | 1676 | G | 1677 | A | 1679 | U | 1680 | U | 1681 | cWW | cwW | ntSH |
| 2 | HL_4V9F_032 | 4V9F | 0.0000 | 1 | Anticodon loop related | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH |
| 3 | HL_5J7L_012 | 5J7L | 0.4315 | 1 | GNRA related | AA | SSU rRNA | G | 462 | U | 463 | U | 464 | A | 465 | A | 466 | A | 468 | C | 469 | C | 470 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAGAAUU | 1 |
| ACUCAUACU | 1 |
| GUUAAUACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAGAAU | 1 |
| CUCAUAC | 1 |
| UUAAUAC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Anticodon loop related (1)
- GNRA with extra cWW (1)
- GNRA related (1)
- Basepair signature
- cWW-cWW-tSH-R-R-R
- Heat map statistics
- Min 0.23 | Avg 0.24 | Max 0.44
Coloring options: