Motif HL_70782.2 Version HL_70782.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_134 | 8P9A | 0.0637 | 3 | Externally structured (H) | AR | LSU rRNA | C | 958 | C | 959 | G | 963 | cWW |
| 2 | HL_8CRE_021 | 8CRE | 0.0000 | 3 | Externally structured (H) | 1 | LSU rRNA | C | 954 | C | 955 | G | 959 | cWW |
| 3 | HL_4KR9_003 | 4KR9 | 0.3843 | 3 | X | RNA (39-MER) | G | 10 | G | 12 | C | 15 | cWW | |
| 4 | HL_6FQL_001 | 6FQL | 0.9959 | 2 | B | RNA (13-mer) | U | 5 | U | 7 | A | 9 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUCAG | 2 |
| GUGUCC | 1 |
| UUUAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCA | 2 |
| UGUC | 1 |
| UUA | 1 |
- Annotations
-
- (2)
- Externally structured (H) (2)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.06 | Avg 0.48 | Max 1.00
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