Motif HL_71391.1 Version HL_71391.1 of this group appears in releases 3.91 to 4.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3D2V_001 | 3D2V | 0.0000 | 1 | A | TPP riboswitch (THI element) | G | 17 | U | 19 | C | 20 | A | 21 | C | 22 | cWW | cWH |
| 2 | HL_9DFE_004 | 9DFE | 0.6640 | 1 | 1A | LSU rRNA | G | 139 | G | 140 | A | 141 | A | 142 | C | 142|||A | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUCAC | 1 |
| GGGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCA | 1 |
| GGAA | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 | 4.14 | 4.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 | 2026-09-09 | 2026-10-07 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.66 | Avg 0.33 | Max 0.66
Coloring options: